Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90659g00009 ATGGAAATGGAAGGTTTTGCTGCTTCATCAGAGAGGAGTAGTGGTGATGGTTTAACCAATCAAGTTAGTGTTGTTGGAGGAGGGTATGCTTCATCTTCATCACTGGTTTTGGATAGGGACAAGGGTGAGTTGGTTGAGGCACCTGTGAAATTAGAGAGAAAGGGTGTGTTCCCTGAGAGAAGCATTGAAGCTTTGAAGAACCACAGTGAAGCTGAGAGGAGAAGAAGAGCTAGAATCAATGCACACCTTGATACACTCAGAACTGTCATCCCTGCTGCTAACAAGATGGACAAAGCATCATTGCTGGCTGAGGTTATTAGGCATCTGAAAGAGCTGAAAAGGAATGCAGCAGAAGCATGTCAAGGCCTAATGATACCAAAGGACAATGATGAAATAAGAGTTGAAGAACAAGAAGGTGGATTGAATGGCTTCCCTTATTCAATAAGAGCTTCTCTATGCTGCGAATACAAACCCGGCTTATTATCTGATATAAGACAAGCACTTGATGCACTCCATCTCATGATAATAAGCGCCGAGATCGCGACGCTAGGAGGCAGGATGAAGAATGTGTTTGTGATAATCAGCTGTGAAGAGCAGAGCTTTGAAGACGCCGAGTACAGGCAGTTCCTTGCCGGATCGGTCCACCAAGCTCTTAGATCTGTTCTTGATAGGTTTTCAGTGTCACAGGACATGTTACAGTCTAGAAAGAGGAGGAGAATTTCTATATTCAGTTCATCATCCTTGGAAGATTTTTTGTAA 759 0.4348 MEMEGFAASSERSSGDGLTNQVSVVGGGYASSSSLVLDRDKGELVEAPVKLERKGVFPERSIEALKNHSEAERRRRARINAHLDTLRTVIPAANKMDKASLLAEVIRHLKELKRNAAEACQGLMIPKDNDEIRVEEQEGGLNGFPYSIRASLCCEYKPGLLSDIRQALDALHLMIISAEIATLGGRMKNVFVIISCEEQSFEDAEYRQFLAGSVHQALRSVLDRFSVSQDMLQSRKRRRISIFSSSSLEDFL 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90659g00009 252 Pfam Helix-loop-helix DNA-binding domain 67 112 IPR011598 GO:0046983
Stsc90659g00009 252 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 64 119 IPR036638 GO:0046983
Stsc90659g00009 252 MobiDBLite consensus disorder prediction 1 20 - -
Stsc90659g00009 252 SUPERFAMILY ACT-like 151 228 IPR045865 -
Stsc90659g00009 252 PANTHER TRANSCRIPTION FACTOR BHLH30 14 244 IPR045847 GO:0003700|GO:0006355
Stsc90659g00009 252 SMART finulus 69 118 IPR011598 GO:0046983
Stsc90659g00009 252 ProSiteProfiles ACT domain profile. 149 229 IPR002912 -
Stsc90659g00009 252 Gene3D - 59 120 IPR036638 GO:0046983
Stsc90659g00009 252 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 63 112 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90659g00009 Stsc-Chr90659 79617 81883 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90659g00009 50 241 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 40.306 1.20e-33 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc90659g00009 HLH 2.7e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90659g00009 - - lja:Lj3g3v2848980.1 377.096