Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90658g00021 ATGGGAAGGTGTCAATGCTGCGATGATCAGAATGGCCTCAAAAAAGGACCATGGTCTCCAGAAGAAGATGAAAAGCTTGTCCAGTATATTCAAAAACATGGCCATCGAATTTGGAGGGCTGTCCCTAAGCTAGCAGGTCTTAATAGATGTGGTAAGAGCTGTAGGTTTAGGTGGACGAATTATTTAAGGCCTGATGTGAAGAGGGGCAAGTTCTCTCAAGAAGAGGAGCAAACAATTATGCGTCTTCATTCCACTCTTGGAAACAGATGGTCAGCAATTGCAACACATCTTCTCGGGAGGACTGATAACGAAATAAAGAATTTCTGGAACACTCATTTGAAGAAGAAGCTGATTCAAATGGGTCTTGATCCAGCAACTCATCAGCCAGTGTTTCAACAGAATCTGACCTTACAAGCAGAATTAGCACTTCAGCTGGCAAATCTTAATAATAACCATCATCATCATCATCAATATTTACCTCAATCTGCTTTGATGGCCTCATCAAATTCCTTGATGAGTACAATTGGCAGCTACTCATCCTCCTATGACCTAAACAATAATAACGGAATCACAAACAACATGGAACCTTTCAGTTTGTTAAACTTAACCAACATGTGTAATATGAAAGAGATCAATCAAGCAGTTATAATGGATAATAGTGTTAACAATAATTCATCATTTGGCGCATTTCCTCATCATGGAAATGGGATTATTGATGATTATGATAGCTCCCATCTGCTTCATGACTCTTACCATCAAAACATGCTATTATTATCTCACTTTTCAGACCCACCTCAAGTCCCTTTCATCAGTTCCCAACCCCAACCGTGTTTCAATATTGATGAGCAGGATCGATATCAAGGTACTACTACTAATAATAATGACGATGACTCCACATGGATTATTCCATCTTTGGCTCCAATTCAGGTTGTGACCGGGTCTGGGGACATGAAGTAG 957 0.3992 MGRCQCCDDQNGLKKGPWSPEEDEKLVQYIQKHGHRIWRAVPKLAGLNRCGKSCRFRWTNYLRPDVKRGKFSQEEEQTIMRLHSTLGNRWSAIATHLLGRTDNEIKNFWNTHLKKKLIQMGLDPATHQPVFQQNLTLQAELALQLANLNNNHHHHHQYLPQSALMASSNSLMSTIGSYSSSYDLNNNNGITNNMEPFSLLNLTNMCNMKEINQAVIMDNSVNNNSSFGAFPHHGNGIIDDYDSSHLLHDSYHQNMLLLSHFSDPPQVPFISSQPQPCFNIDEQDRYQGTTTNNNDDDSTWIIPSLAPIQVVTGSGDMK 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90658g00021 318 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Stsc90658g00021 318 Gene3D - 14 67 - -
Stsc90658g00021 318 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Stsc90658g00021 318 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 220 - -
Stsc90658g00021 318 SMART sant 14 64 IPR001005 -
Stsc90658g00021 318 SMART sant 67 115 IPR001005 -
Stsc90658g00021 318 Gene3D - 70 117 - -
Stsc90658g00021 318 FunFam MYB-related transcription factor 14 67 - -
Stsc90658g00021 318 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Stsc90658g00021 318 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Stsc90658g00021 318 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Stsc90658g00021 318 FunFam MYB transcription factor 69 130 - -
Stsc90658g00021 318 CDD SANT 70 113 IPR001005 -
Stsc90658g00021 318 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Stsc90658g00021 318 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Stsc90658g00021 318 CDD SANT 17 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90658g00021 Stsc-Chr90658 116607 117826 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90658g00021 1 305 MYB Transcription Factor Family AT1G34670 47.401 1.51e-83 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc90658g00021 Myb_DNA-binding 5.5e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90658g00021 K09422 - qsa:O6P43_015308 264.618