Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90658g00020 ATGGGAAGGTGTCTACGCTGCGAAGATGGAAGTAGTAGTGGTGGTGTCAAGAAAGGTCCATGGACTCCTGAAGAAGATCAAAAGCTTGTTCACCACATTTACAAACATGGCCATAGAAATTGGAGGCTTCTCCCTAAGCTAGCAGGTCTTAATAGATGTGGTAAGAGCTGCAGGCTTAGGTGGATCAACTATTTGAGGCCTGGTATCAAGAGGGAAAAGTTCTCTCAAGAAGAGGAGCAAACCATTCTCCATCTTCATTCCATTCTTGGAAACAAATGGTCAACAATTGCATCGTATCTTCCATGGAGGACTGATAATGATATAAAGAATTTCTGGAACACTCGTTTGAAGAAGAAGCTGATTCAAATGGGGCTTGATCCAGTGACTCATCAGCCAGTGATTGTAGATCATTACTCATCGATGGTTGAACAGGCTCTGAGGTTACAACAAGAATTAGAAGCTCAGCTGGCAAATCTTCGATGCCTTCAAATTCAATATCTATCTAATATATCCTCTTATGATAACCTAAATGGAAGCATCATCACAAACACGGAGCCTTTCGGTTCATTGAACTCCATCTCTACCATCTCAAATGAGAACCACAACCCAGTTATACACTTTCCACCACAACTGGACAATAATAATCATATGCTATCTCAATTTTTTGAGTTACCACAAGAAGGTGAAGGTGGTAGTGGTACTACTATTAATAATGAGAACTCCTCGTGGATTATTCCACCTCCTTCTCCATCTATTGCTCCAGATGATGTTAATTGA 777 0.408 MGRCLRCEDGSSSGGVKKGPWTPEEDQKLVHHIYKHGHRNWRLLPKLAGLNRCGKSCRLRWINYLRPGIKREKFSQEEEQTILHLHSILGNKWSTIASYLPWRTDNDIKNFWNTRLKKKLIQMGLDPVTHQPVIVDHYSSMVEQALRLQQELEAQLANLRCLQIQYLSNISSYDNLNGSIITNTEPFGSLNSISTISNENHNPVIHFPPQLDNNNHMLSQFFELPQEGEGGSGTTINNENSSWIIPPPSPSIAPDDVN 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90658g00020 258 Coils Coil 142 165 - -
Stsc90658g00020 258 CDD SANT 73 116 IPR001005 -
Stsc90658g00020 258 MobiDBLite consensus disorder prediction 230 246 - -
Stsc90658g00020 258 SMART sant 70 118 IPR001005 -
Stsc90658g00020 258 SMART sant 17 67 IPR001005 -
Stsc90658g00020 258 CDD SANT 20 65 IPR001005 -
Stsc90658g00020 258 Gene3D - 17 70 - -
Stsc90658g00020 258 FunFam MYB-related transcription factor 17 70 - -
Stsc90658g00020 258 Gene3D - 73 120 - -
Stsc90658g00020 258 Pfam Myb-like DNA-binding domain 71 114 IPR001005 -
Stsc90658g00020 258 Pfam Myb-like DNA-binding domain 18 65 IPR001005 -
Stsc90658g00020 258 FunFam MYB transcription factor 72 133 - -
Stsc90658g00020 258 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 16 69 IPR017930 -
Stsc90658g00020 258 MobiDBLite consensus disorder prediction 226 258 - -
Stsc90658g00020 258 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 70 120 IPR017930 -
Stsc90658g00020 258 ProSiteProfiles Myb-like domain profile. 66 116 IPR001005 -
Stsc90658g00020 258 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 195 - -
Stsc90658g00020 258 SUPERFAMILY Homeodomain-like 15 112 IPR009057 -
Stsc90658g00020 258 ProSiteProfiles Myb-like domain profile. 13 65 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90658g00020 Stsc-Chr90658 106087 107174 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90658g00020 1 212 MYB Transcription Factor Family AT1G34670 53.680 7.36e-73 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc90658g00020 Myb_DNA-binding 6.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90658g00020 K09422 - gmx:100782792 239.965