Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90658g00019 ATGGCGTGCGGCCCCAAGTGTCATTTGGCGGTTATTAGAGAGGAAAGATTAGTAGCTTTAAATAATCCATCTATTAATCATAAGATTATGGGAAGGTGTCTACGCTGCGGAGATGGGAGTAGCCTCAAGAAAGGACCATGGACTCCTGAAGAAGATCAAAAGCTTCTTTGCTACATTCACAAACATGGCCGTGGCAGTTGGAGAGCAATTCCTAAGCTAGCCGGTCTTAATAGATGTGGTAAGAGCTGTAGGCTTAGGTGGACCAACTATTTAAGGCCTGGTATCAAGAGGGGTGAATTCTCCCAAGAAGAAGAACAAACCATTATACATCTTCATTCCATTCTTGGAAACAAATGGACAACAATTGCATCCCATCTACCAGGGAGGACTGATAATGACATAAAGAATTTCTGGAACACTCGTGCGAAGAAAAAGCTGATTCAGATGGGTGTTGATCCAGTTACTCATAAGCCACTGATGATGGATCATCGTTCAACAGTTGAACGGGCTGTGAAGTTACATTCAGAATTAGAAGCTCATCTGGCAAAGCTTCAATACCTTAAAACTCAATATTTATCTACTTTATCCTCATCTGACAGCATCATCACAAATATGGAACCTTTGTTGAACTCCATCTCTAATGAGAACCACAAACTAGTTACAAACTTGCCACAGCTGGACAATAATAATCATCATCATCATAATCATAATAATCCATCAGTAGCCGCGTTTTCTGATGGAATTATTGATGATAGCTTCCAAACACTGGACCTTCCAGATATGCTATCTCACTTTTTTGAATTACCACAAGAAGGTAAAGGTGGTACTACTATTAATAATGATGATGACTCCTCGTGGATTATTCCACCTCCTTCTCCATCTATTGCTCCAGATGATGATGTGAATTGA 909 0.4026 MACGPKCHLAVIREERLVALNNPSINHKIMGRCLRCGDGSSLKKGPWTPEEDQKLLCYIHKHGRGSWRAIPKLAGLNRCGKSCRLRWTNYLRPGIKRGEFSQEEEQTIIHLHSILGNKWTTIASHLPGRTDNDIKNFWNTRAKKKLIQMGVDPVTHKPLMMDHRSTVERAVKLHSELEAHLAKLQYLKTQYLSTLSSSDSIITNMEPLLNSISNENHKLVTNLPQLDNNNHHHHNHNNPSVAAFSDGIIDDSFQTLDLPDMLSHFFELPQEGKGGTTINNDDDSSWIIPPPSPSIAPDDDVN 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90658g00019 302 MobiDBLite consensus disorder prediction 269 302 - -
Stsc90658g00019 302 Gene3D - 41 97 - -
Stsc90658g00019 302 CDD SANT 99 140 IPR001005 -
Stsc90658g00019 302 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 39 95 IPR017930 -
Stsc90658g00019 302 Pfam Myb-like DNA-binding domain 97 140 IPR001005 -
Stsc90658g00019 302 Pfam Myb-like DNA-binding domain 44 91 IPR001005 -
Stsc90658g00019 302 Gene3D - 99 146 - -
Stsc90658g00019 302 MobiDBLite consensus disorder prediction 273 287 - -
Stsc90658g00019 302 PANTHER F14D16.11-RELATED 30 243 - -
Stsc90658g00019 302 ProSiteProfiles Myb-like domain profile. 39 91 IPR001005 -
Stsc90658g00019 302 FunFam MYB-related transcription factor 43 96 - -
Stsc90658g00019 302 CDD SANT 46 91 IPR001005 -
Stsc90658g00019 302 FunFam MYB transcription factor 98 159 - -
Stsc90658g00019 302 ProSiteProfiles Myb-like domain profile. 92 142 IPR001005 -
Stsc90658g00019 302 SUPERFAMILY Homeodomain-like 41 138 IPR009057 -
Stsc90658g00019 302 SMART sant 43 93 IPR001005 -
Stsc90658g00019 302 SMART sant 96 144 IPR001005 -
Stsc90658g00019 302 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 96 146 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90658g00019 Stsc-Chr90658 90668 91972 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90658g00019 30 207 MYB Transcription Factor Family AT1G34670 60.938 1.02e-75 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc90658g00019 Myb_DNA-binding 1.8e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90658g00019 K09422 - gmx:100811162 261.536