Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90658g00005 ATGATGGCTTATCCGCATTACCGGCCACACTTCGGAGACACCACGTTCACCAAATTGTTTGTTGGAGGACTAGCTTGGGAGACTCCAACTGAAGAACTCCGAAAGTATTTCGAGCAGTTCGGCGACATTCTTGAAGCCGTTATCATCACTGATAAGAACACTGGAAAATCCAAAGGCTACGGTTTCGTAACGTTCCGCGATCAAGAATCGGCAAGGAGAGCATGTGCTGATCCAAACCCAGTCATCGATGGAAGAAGAGCTAATTGCAATATTGCTTCTCTTGGCAGGACTAGACCATCACCACCCCGAGGAAGGAACTATATGGTTCAAGCTGGGGGAGGAGGAGAAGGAGGACAGCAGGGTGGTGGTATGGCGGGGGCGGGGCCGTCGTACGGAGGTGTTCCGGGAGCAGGACCATCATCATTGGGAGGAGCAGGAGCAGTAATGTACCCACCGTATGGCTACCCAACCTACACTCCTGATTACGGATATCACCACCAAGCAGCATTGTACAGCCCACAGATTCATCAGCAAGCACAATACTATCATCATCATCAACAACAACAACTATATGGATCAGCATCGTCACCAATGGGCTCACCATATTATTATGGATACTCAATGCAAGCAGCACCAAGAAGCGCATTACTTTCTTCATCACCACAGCATGCAAATCGCTTACCAGCACCTGCTGCTGCTGCTGCAGCTGGACCCTCCTATGTATACTACCCTACCACACCAATGGAACCCTCCTCCTTCTCTGCTTATCATCATCATCATCCACTCCAACAACCAACAATAAGGCAACCCTTTCCATCTCCCACTGATCTACAAACTGAGCAGCAGCAGCAACGTACCTCATCATCATCAACTGAAACAGCAGCAGCAGCTGGAGTAGTTATAACTTCATCAGAAAGTTCGAATACCCAGCAAGGGAAGAAGAACTAA 948 0.4884 MMAYPHYRPHFGDTTFTKLFVGGLAWETPTEELRKYFEQFGDILEAVIITDKNTGKSKGYGFVTFRDQESARRACADPNPVIDGRRANCNIASLGRTRPSPPRGRNYMVQAGGGGEGGQQGGGMAGAGPSYGGVPGAGPSSLGGAGAVMYPPYGYPTYTPDYGYHHQAALYSPQIHQQAQYYHHHQQQQLYGSASSPMGSPYYYGYSMQAAPRSALLSSSPQHANRLPAPAAAAAAGPSYVYYPTTPMEPSSFSAYHHHHPLQQPTIRQPFPSPTDLQTEQQQQRTSSSSTETAAAAGVVITSSESSNTQQGKKN 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90658g00005 315 Gene3D - 12 134 IPR012677 -
Stsc90658g00005 315 SMART rrm1_1 18 90 IPR000504 GO:0003723
Stsc90658g00005 315 PANTHER BOULE-RELATED 9 285 - -
Stsc90658g00005 315 CDD RRM_RBM24_RBM38_like 17 92 - -
Stsc90658g00005 315 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 19 76 IPR000504 GO:0003723
Stsc90658g00005 315 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 17 114 IPR000504 GO:0003723
Stsc90658g00005 315 SUPERFAMILY RNA-binding domain, RBD 5 123 IPR035979 GO:0003676
Stsc90658g00005 315 FunFam RNA-binding protein 24-B isoform X1 4 114 - -
Stsc90658g00005 315 MobiDBLite consensus disorder prediction 253 315 - -
Stsc90658g00005 315 MobiDBLite consensus disorder prediction 269 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90658g00005 Stsc-Chr90658 16818 21448 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90658g00005 13 93 C2H2 Transcription Factor Family AT2G19380 40.741 2.31e-15 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90658g00005 K25006 - gmx:100788516 301.597