Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90656g00021 ATGCCAGAAAACAGGCAGGTTCTGAGGAATGCTGCTTCTAATCAATCCGGTGACAACATTGAAGAAGCAATTCGGCGATTGAAAATCAATGATAATCGGGATAGAGATGCGGCGGGTCAAACTAGCCCGTATCCGGATCGTCCAGGCGAGCCTGATTGCTTATATTTTCTGAGGACTGGAATGTGTGGTTATGGGACTAACTGCCGCTACAATCACCCTGCTCATGTTTCACTGGGTACTCATTATGGGGAAGAGCTCCCTGAGAGGAATGGGCAACCTGATTGTGAGTATTTTCTTAAGACAGGGACATGCAAGTATGGATCATCATGTAAATATCATCATCCAAGGGACAGGAGAGGTGCTGCTCCTGTGTCATTCAATGCTTTAGGCCTTCCAATGCGCCAGGAAGAAAAATCATGTCCCTATTACATGAGAACTGGTTCCTGTAAGTTTGGAGTAGCTTGCAAGTTTCACCATCCGCCACGTGCTTCTTTTGGAGCTTCTGGAATAGCTGGATCTCCCACCTCAATTATTCCCGCATCGGGATATGTTGGTGGATACCCATATTCCTTACCGAGAATGCCATATTTATCTGGGCAGGGTCTTCAGTCTTATGTGCCTCCTTTCTTTTCTTCTCCACAAGGCATTATACCTGGGCAGAGCTGGAACAGCTACATGGGAAGTATGAACCCTGCAATGTCTACTGGTTTTGTTGGATCTAATCTTGTTTACGACTCTATGAATCCGGGTGAGTCACTCTCTGGANNNNNNNNNNAGGTAGTAGGTCTTACTCTCCCAGATAGACCTGATCAGCCTGAATGTAGATACTATATGAACACCGGGACCTGCAAGTATGGATCTGATTGCAAGTTCCACCACCCGAAAGAAAGAATCACCCAATCATTCATAAACCCTCTAGGCCTTCCTGTGCGACCTGGACAAGCTATATGTTCTTATTATAGAATCTATGGAATATGCAAGTATGGCCCAACATGCAAATTTGATCATCCAGTTTTGGCAATCCCACAGAACTATCGCTTGGCCACACCTACTGCTTTATCTGGATTGGACACCCCTCTCGATGGAAATCCAAGAGGGACTTTCCAACCACCCGAGACATCACCATCTAAATTATCAAGTGACAAGCATCAGCACTCCGGTAATAATATCAATGATGCACAGGAAGCAGAAGATTCATCCAAGCAAGCTGATCATACCACCTCGAACTCCTTTGAAGCTGCCTCGGAATCCTCCTTACAAGACCAAGATGCTTGA 1275 0.4533 MPENRQVLRNAASNQSGDNIEEAIRRLKINDNRDRDAAGQTSPYPDRPGEPDCLYFLRTGMCGYGTNCRYNHPAHVSLGTHYGEELPERNGQPDCEYFLKTGTCKYGSSCKYHHPRDRRGAAPVSFNALGLPMRQEEKSCPYYMRTGSCKFGVACKFHHPPRASFGASGIAGSPTSIIPASGYVGGYPYSLPRMPYLSGQGLQSYVPPFFSSPQGIIPGQSWNSYMGSMNPAMSTGFVGSNLVYDSMNPGESLSGXXXXVVGLTLPDRPDQPECRYYMNTGTCKYGSDCKFHHPKERITQSFINPLGLPVRPGQAICSYYRIYGICKYGPTCKFDHPVLAIPQNYRLATPTALSGLDTPLDGNPRGTFQPPETSPSKLSSDKHQHSGNNINDAQEAEDSSKQADHTTSNSFEAASESSLQDQDA 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90656g00021 424 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 91 116 IPR000571 GO:0046872
Stsc90656g00021 424 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 49 73 IPR000571 GO:0046872
Stsc90656g00021 424 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 313 337 IPR000571 GO:0046872
Stsc90656g00021 424 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 138 161 IPR000571 GO:0046872
Stsc90656g00021 424 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 270 295 IPR000571 GO:0046872
Stsc90656g00021 424 ProSiteProfiles Zinc finger C3H1-type profile. 268 296 IPR000571 GO:0046872
Stsc90656g00021 424 MobiDBLite consensus disorder prediction 403 424 - -
Stsc90656g00021 424 SUPERFAMILY CCCH zinc finger 52 74 IPR036855 GO:0046872
Stsc90656g00021 424 SUPERFAMILY CCCH zinc finger 271 297 IPR036855 GO:0046872
Stsc90656g00021 424 SUPERFAMILY CCCH zinc finger 94 118 IPR036855 GO:0046872
Stsc90656g00021 424 SMART c3hfinal6 47 74 IPR000571 GO:0046872
Stsc90656g00021 424 SMART c3hfinal6 89 116 IPR000571 GO:0046872
Stsc90656g00021 424 SMART c3hfinal6 136 161 IPR000571 GO:0046872
Stsc90656g00021 424 SMART c3hfinal6 311 338 IPR000571 GO:0046872
Stsc90656g00021 424 SMART c3hfinal6 268 295 IPR000571 GO:0046872
Stsc90656g00021 424 ProSiteProfiles Zinc finger C3H1-type profile. 89 117 IPR000571 GO:0046872
Stsc90656g00021 424 Gene3D - 265 339 - -
Stsc90656g00021 424 ProSiteProfiles Zinc finger C3H1-type profile. 47 75 IPR000571 GO:0046872
Stsc90656g00021 424 SUPERFAMILY CCCH zinc finger 309 337 IPR036855 GO:0046872
Stsc90656g00021 424 SUPERFAMILY CCCH zinc finger 133 161 IPR036855 GO:0046872
Stsc90656g00021 424 ProSiteProfiles Zinc finger C3H1-type profile. 311 339 IPR000571 GO:0046872
Stsc90656g00021 424 PANTHER PROTEIN PHOSPHATASE RELATED 22 364 - -
Stsc90656g00021 424 MobiDBLite consensus disorder prediction 352 424 - -
Stsc90656g00021 424 ProSiteProfiles Zinc finger C3H1-type profile. 134 162 IPR000571 GO:0046872
Stsc90656g00021 424 MobiDBLite consensus disorder prediction 1 25 - -
Stsc90656g00021 424 MobiDBLite consensus disorder prediction 367 396 - -
Stsc90656g00021 424 Gene3D - 85 169 - -
Stsc90656g00021 424 Gene3D - 14 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90656g00021 Stsc-Chr90656 142518 146305 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90656g00021 1 415 C3H Transcription Factor Family AT1G04990 45.902 3.76e-115 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Stsc90656g00021 zf-CCCH 4.9e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90656g00021 - - gmx:100812856 634.409