Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90656g00015 ATGCGTCGAGGTAGAGATGCCGTCGCCGCAGCCGCAGCCGCAGCAGCAGATCCGGCGCAGCCAAACGCCGATTCAAGAAACAACGTCGGCGAAACGCGGTTCCGCGGCGTGAGGAAGCGACCATGGGGGAGATTCGCGGCGGAGATAAGGGATCCATGGAAGAAGGCTCGCGTGTGGCTTGGAACCTTCGATTCAGCCGAGGACGCCGCCAGAGCCTACGACGCTGCCGCCCGATCCTTCCGTGGACCAAAAGCAAAGACCAATTTTCCGTTCCCCAACGCCGAAATCGGAATCTCGCACTCTCAGATTCCGATTCACGGTTACGATGATCCGGTTAACGGGTTCGGGAAGTTCGAACCGGTTCAGGTGAACCGGCCAACGAGCAGCGGCATGAGCAGCACGGTCGAATCGTTCAGCGGACCTAGGGTTTCGTCAACGGCGGCACTTCCGGCGGTCGATCGGCGCCGGAGGAAGCCGGTTGTAATTCCGGTCGACGATTGCCACAGCGATTGCGATTCGTCATCAACGATCGACGACGAGGATTCGTTCAGGAAAACCCTAAATTTCGATCTAAACCTTCCGCCGCCAGAGGAAGACGACGTCGGTTTCACCGACGAGGAGATTCGCGCCACCGCCTTGTGCCTCTGA 648 0.5941 MRRGRDAVAAAAAAAADPAQPNADSRNNVGETRFRGVRKRPWGRFAAEIRDPWKKARVWLGTFDSAEDAARAYDAAARSFRGPKAKTNFPFPNAEIGISHSQIPIHGYDDPVNGFGKFEPVQVNRPTSSGMSSTVESFSGPRVSSTAALPAVDRRRRKPVVIPVDDCHSDCDSSSTIDDEDSFRKTLNFDLNLPPPEEDDVGFTDEEIRATALCL 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90656g00015 215 CDD AP2 32 90 IPR001471 GO:0003700|GO:0006355
Stsc90656g00015 215 SMART rav1_2 33 96 IPR001471 GO:0003700|GO:0006355
Stsc90656g00015 215 PRINTS Ethylene responsive element binding protein signature 34 45 IPR001471 GO:0003700|GO:0006355
Stsc90656g00015 215 PRINTS Ethylene responsive element binding protein signature 56 72 IPR001471 GO:0003700|GO:0006355
Stsc90656g00015 215 FunFam Ethylene-responsive transcription factor 2 32 91 - -
Stsc90656g00015 215 SUPERFAMILY DNA-binding domain 33 91 IPR016177 GO:0003677
Stsc90656g00015 215 MobiDBLite consensus disorder prediction 1 32 - -
Stsc90656g00015 215 Gene3D AP2/ERF domain 32 91 IPR036955 GO:0003700|GO:0006355
Stsc90656g00015 215 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 24 181 - -
Stsc90656g00015 215 Pfam AP2 domain 32 82 IPR001471 GO:0003700|GO:0006355
Stsc90656g00015 215 ProSiteProfiles AP2/ERF domain profile. 33 90 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90656g00015 Stsc-Chr90656 93838 94485 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90656g00015 1 215 AP2-EREBP Transcription Factor Family AT1G50640 48.927 7.07e-42 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Stsc90656g00015 AP2 2.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90656g00015 K09286 - qsa:O6P43_014526 216.853