Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90656g00014 ATGGAAAACTCAGACTACAACGAACCCGAAAAGAAGAGGCCTCACCTCACTTCCGTTTCTTCTCGTGTGGCGCGAAACTCTCCATCCAACAACAAAACCGCTGATGCTGGAGTCTTACAAGCACAGAACCAGCAGCTCGTTCAAAAGATTGAAATCCAAAAGCGTGCTTTGCATGACCTTGAGGAAAAAATTAGAGAGTTAAACGAGCAGCAAAATACTTATGACGACTTGTTAATTGCAGTGAACCAATGCTGGATTCAGTTATCTGATGATCTGACACTTCTTGGTGTACGAGCTGGTAGAAGCAAAGATGCATTGCAAACACTGGATTACCATCATAATCGTCAAGGTTCACTTCCTTCATGCCCTGCGGAGGATATATTTCTGTGTAGACTGATCCAGAAAGATTCTGTTGATGGAAACAGTAGTGGTGAGAGAATTAATTATGTTGAAGAAAGCCTTGCTTTACGTCGCTCATCTACATTAGAGTTGTTGAAACTCCTTCAAGATACCATGGAGGCCCAGATAGAAAGAATTGACAGTATAGCCCAGGTTTTGCATGGAGAATTATCTTCAGAAGATGCTATAATTCAGATGTCTCAGCTTGATGACATGATGAAAGAGGAGGAAAATAATTTACGTGAAATCATTAATACTCTCAACGATTCGCATAAAGAGTATACTGCTGGAATTCAACGTTATATCAGTTGGTGCTTACAAGATCAGTCTGAAGTTAAACGCCTTGCAGGTGACCTTGACGAGAGCATAGCTGGACTTGAAGAGAGTAGAAGAAAATTAGTCAATCTGAAAATGCAAAAGGATGCAGCAGCAGGAATGCAATCCCCTAGTGCTGATTCAGTTAACGGAAACTTGTCTCCTGAAAAGCCCGCAGACAGGACTATGAGTTTGCGTGAGCTGAAGGAGTCAATTGAGGAAGCAAAGATACTTAATGCTGATCGTCTTACTGAGCTCCAAGAGGCACATGAAGAAAATGAAACCTTGACAAAGCAATTCCAAGATTTTCAGAATGAACTGACTGATGACAAGTATATACGCACTTCCCGAATATATTCATTGACAAATGATCAACTTCAACATTGGATTGCTGAGTTAGCTCGGTATAAGATGTTGGTAGAGTCTTTGCAGGCTGGAAGTGTCCATGTTACAAAATGGGAGAAGGAGCTGAACTCCAAATTGGAGTCTGTTGATACTGCAAGGCATGCCATTGACTGTTCAGATTCTAGGAGTGAAGAGCTAGAGGTTCAGTTGCAGAAGTGTACTATTGAAAAGAATGATCTTGAAATTAAGATGGAAGAGGCTATACAAGATACTGGGAGAAAGGATATCAAATCCGAGTTTCGTGTGATGGCTTCAGCTTTGTCCAAAGAAATGGGAATGATGGAAGCTCAAGTGAAGCGATGGAAGGATGCAGCTCATGAGGCTGTATCGTTACGCGAGAAAGCTCATTCACTGAGAGCCATGTTGAGTGGGAAGACAAGTGAAGTTAGCAGCCTTGCAAACAAATGTTCTGAACAGGATTCGGAAATCAAATCCTTAAAAACGTTGATTGAAAAGCTACAGAAGGAGAAACTAGAGTTAGAATTCGTTCTGGATATGTATGGACAAGAGAATTATGATAAAAGTACTCTGGAAGAAATTAGAGAATCTGAAAATAAAGCCCACTCTCAAGCAGAAATGCTGAAAAATGCTTTAGATGAACATAGTCTGGAGTTAAGAGTGAAAGCTGCTAATGAAGCTGAAGAAGCTTGTGAACAAAGGCTTGCTGCTGCAGAAGCTGAAATAGAGGACTTAAGGGCCAAGTTGGATGCAGCTGAAAGAGATATTTTGGAGCTGACTGAGGCTATTAAAGTGAAAGAGGCTGAGGCAGAGGCATATATATCTGAAATCGAGACTATTGGTCAAGCATATGAAGATATGCAGACACAGAACCAACATCTGATGAAGCAGGTGACTGAGAGGGATGACTATAATATCAAGCTTGTGTCAGAAAGTGTGAAGACAAAACAAGTACACAGTTCTTTAGTGGCTGAGAAGCAGGCCTTGGCAAAGCAACTTCAACAAATTAACGCTTTAATTGATGCCTCAAAAATGAGGATTGCACACGTTGAGGAACAGATGAAGGCCGTTCTCTCGGAAGGCATTAAATGTAATCAGGAGGAAAAAAACCTTCATGTCACTCTGGAATTTGCCAAGTGGGAATTGGCTGATGCTGAGAAGGAGTTAAAATGGCTGAAGTCTGCTCTTTCCTCTTCCGAGAAAGAATATGACCAAATACAGAAAGATGTGGCAGCAGTTGAGATGGAATTAGAAAGTGAAAGGAGTGCGCGGATGAAGCTTGAGGAAGAACTCAGGGAAGTGAACAGGCAAATCGCTGAGCTGAGTTCCGAAACCGGTGAAACTGCAATACAAAAGCTCGAAGCAGAGATAAAGATCTGCAAGAACATGATCAAGTGCACCGTCTGTTCCGATCGGCCAAAGGAGGTCGTGATTGTGAAGTGCTATCATCTGTTTTGCAACCCATGCATACAAAGAAATCTAGAGCTGAGGCACCGGAAGTGTCCTGCATGTGGAACAGCTTTTGGACAAAGTGATGTCCGCTTTGTTAAAATATGA 2634 0.418 MENSDYNEPEKKRPHLTSVSSRVARNSPSNNKTADAGVLQAQNQQLVQKIEIQKRALHDLEEKIRELNEQQNTYDDLLIAVNQCWIQLSDDLTLLGVRAGRSKDALQTLDYHHNRQGSLPSCPAEDIFLCRLIQKDSVDGNSSGERINYVEESLALRRSSTLELLKLLQDTMEAQIERIDSIAQVLHGELSSEDAIIQMSQLDDMMKEEENNLREIINTLNDSHKEYTAGIQRYISWCLQDQSEVKRLAGDLDESIAGLEESRRKLVNLKMQKDAAAGMQSPSADSVNGNLSPEKPADRTMSLRELKESIEEAKILNADRLTELQEAHEENETLTKQFQDFQNELTDDKYIRTSRIYSLTNDQLQHWIAELARYKMLVESLQAGSVHVTKWEKELNSKLESVDTARHAIDCSDSRSEELEVQLQKCTIEKNDLEIKMEEAIQDTGRKDIKSEFRVMASALSKEMGMMEAQVKRWKDAAHEAVSLREKAHSLRAMLSGKTSEVSSLANKCSEQDSEIKSLKTLIEKLQKEKLELEFVLDMYGQENYDKSTLEEIRESENKAHSQAEMLKNALDEHSLELRVKAANEAEEACEQRLAAAEAEIEDLRAKLDAAERDILELTEAIKVKEAEAEAYISEIETIGQAYEDMQTQNQHLMKQVTERDDYNIKLVSESVKTKQVHSSLVAEKQALAKQLQQINALIDASKMRIAHVEEQMKAVLSEGIKCNQEEKNLHVTLEFAKWELADAEKELKWLKSALSSSEKEYDQIQKDVAAVEMELESERSARMKLEEELREVNRQIAELSSETGETAIQKLEAEIKICKNMIKCTVCSDRPKEVVIVKCYHLFCNPCIQRNLELRHRKCPACGTAFGQSDVRFVKI 877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90656g00014 877 SMART ring_2 825 863 IPR001841 -
Stsc90656g00014 877 Coils Coil 692 712 - -
Stsc90656g00014 877 ProSitePatterns Zinc finger RING-type signature. 840 849 IPR017907 -
Stsc90656g00014 877 MobiDBLite consensus disorder prediction 1 17 - -
Stsc90656g00014 877 MobiDBLite consensus disorder prediction 274 298 - -
Stsc90656g00014 877 Coils Coil 553 573 - -
Stsc90656g00014 877 ProSiteProfiles Zinc finger RING-type profile. 825 863 IPR001841 -
Stsc90656g00014 877 Coils Coil 509 536 - -
Stsc90656g00014 877 CDD RING-HC_Bre1-like 817 873 - -
Stsc90656g00014 877 Pfam Zinc finger, C3HC4 type (RING finger) 824 866 - -
Stsc90656g00014 877 Coils Coil 416 443 - -
Stsc90656g00014 877 Coils Coil 324 344 - -
Stsc90656g00014 877 Coils Coil 43 80 - -
Stsc90656g00014 877 MobiDBLite consensus disorder prediction 19 35 - -
Stsc90656g00014 877 PANTHER RING FINGER PROTEIN-RELATED 9 877 IPR013956 GO:0004842|GO:0010390
Stsc90656g00014 877 MobiDBLite consensus disorder prediction 279 295 - -
Stsc90656g00014 877 SUPERFAMILY RING/U-box 824 868 - -
Stsc90656g00014 877 Coils Coil 734 803 - -
Stsc90656g00014 877 MobiDBLite consensus disorder prediction 1 35 - -
Stsc90656g00014 877 Coils Coil 192 226 - -
Stsc90656g00014 877 Coils Coil 580 635 - -
Stsc90656g00014 877 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 806 876 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90656g00014 Stsc-Chr90656 80664 89543 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90656g00014 809 872 RAD5 or RAD16-like Gene Family AT5G05130 32.812 5.96e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90656g00014 K10696 - gmx:100796610 1286.17