LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc90656g00004	ATGAGGAAGAGGGAGAGGGAAAACCCTTGTGGAGTGTGTGGGCACTATCACAAGTACGAAGAAGGTGAAGTGTGTTCGGTTTGCGGTCACCGGATTCCAGTCGGATCGGAGAAATCATCGGTGCAAGTTAGCGCCTTCCCCTCCGTGATCTTGCCGGAGTTTCTTTATCTCGGTAGCTACGACAACGCATCGCGCTCTGAGCTTCTCAAGACTCAAGGAATCTCTCGTATTCTCAATACTGTTCCTTCTTGTCAAAATCTCTACAAGAACTCATTTACCTATCAATGCCTACCAGATGATAAAACTTTGCCATTTGACGAAGCAATTCAGTTTTTAGAGCAATGTGAGAGAGATAAGGCACGTGTTCTGGTTCATTGTATGTCTGGAAAGAGTAGGTCTCCAGCCATTGTTATCGCATACTTAATGAAGTCAAAAGGATGGAGACTCCCACAAAGTTATCAATGGGTCAAGGAACGACGATCATCCGTGGAATTAAATGAAGTTGTCTACCAGCAACTGCAGGAGTTTGAGAACAAGTTGTTCGGATCAATTGACGGTGGCAACCCTGTTCTGGCTGGTTTCCCCTCTGCAGGTCCGATCAACTTTGGATTCCCAAAGATCAGCGAATCAGCTCCATCACTCCCCGCCTTCACCGCTCCTGGAACTACTTCAATATTCACCCGATCACCCTTGGATATAGCTCCTGGCGAGTTCAAGTTCGGAGCTGGCCAGACACAGAACGGTGTGACTGGAATCCCATTCAATGCAAATCCACCAAATCCAAATGGCACTGATATCCAGATGGATGGTTCTTGA	816	0.4694	MRKRERENPCGVCGHYHKYEEGEVCSVCGHRIPVGSEKSSVQVSAFPSVILPEFLYLGSYDNASRSELLKTQGISRILNTVPSCQNLYKNSFTYQCLPDDKTLPFDEAIQFLEQCERDKARVLVHCMSGKSRSPAIVIAYLMKSKGWRLPQSYQWVKERRSSVELNEVVYQQLQEFENKLFGSIDGGNPVLAGFPSAGPINFGFPKISESAPSLPAFTAPGTTSIFTRSPLDIAPGEFKFGAGQTQNGVTGIPFNANPPNPNGTDIQMDGS	271

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc90656g00004	271	PANTHER	PROTEIN-TYROSINE-PHOSPHATASE IBR5	1	271	IPR044212	GO:0009734\|GO:0009738\|GO:0033549\|GO:0043407
	Stsc90656g00004	271	SMART	dsp_5	46	179	IPR020422	GO:0006470\|GO:0008138
	Stsc90656g00004	271	SUPERFAMILY	(Phosphotyrosine protein) phosphatases II	47	181	IPR029021	-
	Stsc90656g00004	271	ProSitePatterns	Tyrosine specific protein phosphatases active site.	124	134	IPR016130	GO:0016311\|GO:0016791
	Stsc90656g00004	271	Gene3D	Protein tyrosine phosphatase superfamily	40	185	IPR029021	-
	Stsc90656g00004	271	ProSiteProfiles	Tyrosine specific protein phosphatases domain profile.	103	171	IPR000387	GO:0016311\|GO:0016791
	Stsc90656g00004	271	MobiDBLite	consensus disorder prediction	251	271	-	-
	Stsc90656g00004	271	CDD	DSP_plant_IBR5-like	47	176	-	-
	Stsc90656g00004	271	FunFam	Protein-tyrosine-phosphatase IBR5	36	186	-	-
	Stsc90656g00004	271	Pfam	Dual specificity phosphatase, catalytic domain	55	178	IPR000340	GO:0008138\|GO:0016311
	Stsc90656g00004	271	ProSiteProfiles	Dual specificity protein phosphatase domain profile.	46	182	IPR020422	GO:0006470\|GO:0008138

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc90656g00004	Stsc-Chr90656	13786	17740	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc90656g00004	1	169	Protein tyrosine phosphatase (PTP) family	AT2G04550	75.000	2.07e-96	279

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc90656g00004	K04459		-	gmx:100808721	462.996