Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90655g00002 ATGGGGAAAGGAAGAGCACCATGCTGTGATAAGTCTCAAGTGAAGAAGGGACCTTGGAGCCCTGCTGAGGATCTTAAGCTTATAGCTTTCATCCAGAAGCATGGCCATGAAAACTGGCGCTCTCTTCCCAAGCAAGCAGGGCTCATGCGATGTGGGAAAAGTTGTCGATTGAGATGGATCAATTATCTGAGGCCAGATGTTAAGAGAGGCAATTTCACAGCAGAGGAAGAAGAAACCATAATCAAGCTACATAAAGCCATGGGGAACAAGTGGTCCAAGATTGCATCGCGTTTGCCAGGCAGAACTGACAATGAGATCAAGAATGTGTGGAACACTCACTTGAAGAAACGATTAACTGCAAAATATTCATCAGATTCAGTTGCAGAAGATAATAATAATAATAATAATAATGCAGATGAATCCAAGATTGAATCATCATCACTCACTTCACCCTCTTCATCTTCATCTGAATCATTTTTCTCAAATGAAGAAACACCAAAAACTAACAACAATAATCTTTGCAATGAAACCAATGACCATAACGTTTCACAAACTGATGATGATCATCAACAGCTAAAACGATCATCAAATTATTCATCATCATCATCATTATCATCTTGTGTTGAAAACAAGCATCATCATGATGATGAAGATCATAATCAACAACAATTGGTTTCTCCACCATTATTGAACTATGTTGGACCCTATGATGTTGATGTTACATTGGAAGAGGTTGACAAGCCAAACAATTTGGAGACAAAAGAAGAAGATTGTGAGTTTTGGAAGATGTTAGATAATATTGAAACATTTCTATCATCAAATGAGGTATCTCCTCCTCCTCATCAAACGCAAACATCACCACCAAATCTTGTTCATCAAGATGATGATGAAGCCATGATGATGATGTGGTCCCATGAGCTTGAGAATGAGCTTAATGGAGTAGTAGGTGATGAAACAACAACAAAAGGGTCAAACAATAAGGCTCAACAAGAAATAATTATGGACCCAAATGATGTATTACATAATCAATTAGAATTAGATTTAGACTTGGGGTTTATCCAATTGTGGCCCTCTCTGCCACAAAATACTCCTTAA 1095 0.379 MGKGRAPCCDKSQVKKGPWSPAEDLKLIAFIQKHGHENWRSLPKQAGLMRCGKSCRLRWINYLRPDVKRGNFTAEEEETIIKLHKAMGNKWSKIASRLPGRTDNEIKNVWNTHLKKRLTAKYSSDSVAEDNNNNNNNADESKIESSSLTSPSSSSSESFFSNEETPKTNNNNLCNETNDHNVSQTDDDHQQLKRSSNYSSSSSLSSCVENKHHHDDEDHNQQQLVSPPLLNYVGPYDVDVTLEEVDKPNNLETKEEDCEFWKMLDNIETFLSSNEVSPPPHQTQTSPPNLVHQDDDEAMMMMWSHELENELNGVVGDETTTKGSNNKAQQEIIMDPNDVLHNQLELDLDLGFIQLWPSLPQNTP 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90655g00002 364 SUPERFAMILY Homeodomain-like 14 110 IPR009057 -
Stsc90655g00002 364 SMART sant 15 65 IPR001005 -
Stsc90655g00002 364 SMART sant 68 116 IPR001005 -
Stsc90655g00002 364 FunFam Transcription factor RAX3 9 69 - -
Stsc90655g00002 364 MobiDBLite consensus disorder prediction 122 225 - -
Stsc90655g00002 364 Gene3D - 70 145 - -
Stsc90655g00002 364 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Stsc90655g00002 364 CDD SANT 71 114 IPR001005 -
Stsc90655g00002 364 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Stsc90655g00002 364 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 4 215 - -
Stsc90655g00002 364 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Stsc90655g00002 364 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Stsc90655g00002 364 CDD SANT 18 63 IPR001005 -
Stsc90655g00002 364 Gene3D - 15 68 - -
Stsc90655g00002 364 Pfam Myb-like DNA-binding domain 69 114 IPR001005 -
Stsc90655g00002 364 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Stsc90655g00002 364 MobiDBLite consensus disorder prediction 124 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90655g00002 Stsc-Chr90655 20387 25022 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90655g00002 1 119 MYB Transcription Factor Family AT1G56160 83.193 5.84e-73 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc90655g00002 Myb_DNA-binding 1.8e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90655g00002 K09422 - gmx:100101836 323.168