Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90654g00018 ATGGTAAGTGGCAATAGTGAAGAAAAAGAGAAAGAGCTGCAAGCACTCATGGAAATGAAGGCAAGCATGGATCCGTTTGGTCACTACCTAACCTCATGGACCATCAATGGCAACCCATGTGAGGCTTCTTCCTTTGAAGGTGTGGCCTGCAATGACAAGGGTCAGGTTGCAAATATTTCTTTGCAGGGAAAGGGCCTCATAGGCAAGCTTTCACCAGCCATTGGTAGACTCAAGCATTTGACAGGACTCTACTTGCATTATAACTCTTTGTATGGTGAGATACCAAGGGAAATTGCAAACTTGACTCAGCTTGGTGATTTGTACCTCAATGTTAATCATCTTTCTGGGAAAATCCCAACTGAGATTTCCAACATGGACAACTTGCAAGTTTTGCAGCTTTGCTATAATCAGTTAACAGGAAGCATACCTACCCAGCTTGGTTCTTTGAAGAAGCTGAGTGTTGTTGCTCTTCAGTCAAACCAGTTGACTGGTGCTATCCCTGCTAGTCTTGGTGACTTGGGTATGATGGTGAGGCTTGATTTGAGCTCTAACAAACTCTTTGGTTCCATTCCCACTAGCCTTGCTGATGCTCCTTCACTCAAAATTCTTGATCTTCACAACAATACTCTTTCTGGGAATGTGCCTCCTGCTCTTAAGAGACTTGAAGATGGATTTCTGTATGAGGACAATTTAGGGCTATGTGGACTTGGCTTTAAATCCCTTAAGGCTTGCAGTGCTTCGGATCGCAGACCCGAACCTTATGGAGCAGCAACAAGAGATATCCCAGAGACTGCAAATGTGAAGTTACCTTGCAATGGAAGCCAGTGCCTAAAATCTCCAAAATCCAAACAAGCAGCATCCATTACCATTGGTATAGTTGTGGTTGTAATTGCAGTGTCAGCAATTGGTGTCTTGGCCTTCACGTTACATCGCAGGCGAAAGCAGAAGCTAGGAAGCTCTTTTCATGTCTCTGATGGCAGGCCAAGTGTTGATGAATCCAGGAGTATATACAACAGGAAAAGCGGATCTCCTTTGGCGAGCCTCGAGTACTCTACAGGATGGGACCCCTTATCTGATTGTAGGAGCTTCAATGGTGTTGATAGTGATGAAGAAACCTTCCAGAGTTTCAGGTTCAACTTGGAAGAAATTGAGTCTGCTACTCAGTATTTCTCAGAGATGAATCTGTTGGGTAAGAGTAGCTTCAGCTCAACATATAAAGGAGTTCTAAGAGATGGTTCAGTAGTTGCTGTGAAGAGTATCAACAAAACTAGCTGCAAGTCAGATGAAGGTGAATTCTTGAAGGGATTGAGCATTTTGACATCTCTGAGGAATGATAACTTGGTGAGGCTAAGAGGGTTTTGCTGTTCAAGGGGAAGAGGTGAATGCTTCTTGGTTTATGACTTCGTTTCGAATGGAAATCTTTCGCGGTTTCTTGATTTGAAGGAAGGGGATGGAGAGGTTCTTGAGTGGTCAACTAGAGTGTCTATTGTGAAAGGGATTGCTAAAGGTATAGCATATTTACATGCACACAAGGCTAAGAAACCAGTTCTTGTTCACCAAAACATCTCAGCAGAGAAAGTGCTCGTGGATCACCGGTACAACCCGATGCTGGCAGATTCCGGCCTGCACAAGCTTCTTACCAATGATATTGTCTTCTCTGAACTTAAGGCCAGTGCAGCAAAGGGCTACCTTGCTCCTGAATACACCACAACCGGCCGGTTCACTGAGACGAGTGATGTTTATGCTTTTGGGGTGCTCCTATTGCAGATCCTCTCAGGGAAGAAGCACATCAGTAACTCAATAAGGCTCGCCGCGGAATCATCAAGGTTCCAAGAATTCATTGATCCGAATCTCCATGGGAGATTCTTTGAATATGAAGCGGCTAAGCTGGCGAAAATTGCTTTGCTTTGCTGCAGTGAGTCTCCATTTGAGAGGCCATCTATGGAAGGCATTGTTCAAGAACTGGGAAATTGTAGTAGCTGTATCTGA 1989 0.4434 MVSGNSEEKEKELQALMEMKASMDPFGHYLTSWTINGNPCEASSFEGVACNDKGQVANISLQGKGLIGKLSPAIGRLKHLTGLYLHYNSLYGEIPREIANLTQLGDLYLNVNHLSGKIPTEISNMDNLQVLQLCYNQLTGSIPTQLGSLKKLSVVALQSNQLTGAIPASLGDLGMMVRLDLSSNKLFGSIPTSLADAPSLKILDLHNNTLSGNVPPALKRLEDGFLYEDNLGLCGLGFKSLKACSASDRRPEPYGAATRDIPETANVKLPCNGSQCLKSPKSKQAASITIGIVVVVIAVSAIGVLAFTLHRRRKQKLGSSFHVSDGRPSVDESRSIYNRKSGSPLASLEYSTGWDPLSDCRSFNGVDSDEETFQSFRFNLEEIESATQYFSEMNLLGKSSFSSTYKGVLRDGSVVAVKSINKTSCKSDEGEFLKGLSILTSLRNDNLVRLRGFCCSRGRGECFLVYDFVSNGNLSRFLDLKEGDGEVLEWSTRVSIVKGIAKGIAYLHAHKAKKPVLVHQNISAEKVLVDHRYNPMLADSGLHKLLTNDIVFSELKASAAKGYLAPEYTTTGRFTETSDVYAFGVLLLQILSGKKHISNSIRLAAESSRFQEFIDPNLHGRFFEYEAAKLAKIALLCCSESPFERPSMEGIVQELGNCSSCI 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90654g00018 662 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 146 656 IPR046959 -
Stsc90654g00018 662 FunFam Protein NSP-INTERACTING KINASE 2 123 245 - -
Stsc90654g00018 662 Pfam Protein tyrosine and serine/threonine kinase 394 655 IPR001245 GO:0004672|GO:0006468
Stsc90654g00018 662 FunFam Leucine-rich repeat receptor-like kinase 11 122 - -
Stsc90654g00018 662 Pfam Leucine rich repeat 127 186 IPR001611 GO:0005515
Stsc90654g00018 662 Gene3D Transferase(Phosphotransferase) domain 1 469 661 - -
Stsc90654g00018 662 Gene3D Phosphorylase Kinase; domain 1 360 468 - -
Stsc90654g00018 662 Gene3D Ribonuclease Inhibitor 127 245 IPR032675 -
Stsc90654g00018 662 SUPERFAMILY Protein kinase-like (PK-like) 373 655 IPR011009 -
Stsc90654g00018 662 ProSiteProfiles Protein kinase domain profile. 390 662 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90654g00018 662 SUPERFAMILY L domain-like 12 220 - -
Stsc90654g00018 662 FunFam Protein NSP-INTERACTING KINASE 2 469 659 - -
Stsc90654g00018 662 FunFam Protein NSP-INTERACTING KINASE 2 361 468 - -
Stsc90654g00018 662 Gene3D Ribonuclease Inhibitor 11 126 IPR032675 -
Stsc90654g00018 662 CDD STKc_IRAK 396 655 - -
Stsc90654g00018 662 Pfam Leucine rich repeat N-terminal domain 11 51 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90654g00018 Stsc-Chr90654 149434 152052 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90654g00018 12 503 Miscellaneous Gene Families AT4G22730 54.902 0.0 544
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IV Stsc90654g00018 PK_Tyr_Ser-Thr 1e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90654g00018 - - gmx:100775422 1040.8