Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90654g00012 ATGGAAGAAAAAGAGAATTTTGGTGGTGGGCATGCAGTGGTTGGTGATGTTAGTGCCGCAGAGAGCTTCCACGTGGCACCCAGAGTTGAGACCATAGATTTTTCCGGCGCCTCCACGCCGACGCCGGCGCCAGGGACGGGGACCGATGGGAAGAAGAAGAGAGGCAGGCCTAGGAAGTACGGACCGGATGGGAAGCCGACGGCGGCAGCGGGTGCGCTGTCTCCGATGCCGATATCGGCATCAATTCCGTTGACCGGAGAGTTCTCAGCCTGGAAGAGGGGGAAAGGAAGGTCTGTTGAGTCCATCAAGAAGTCATCATTTAAGTATGACTTTGAAAGTCCAGGACCAGGACCAGGTGAGGGGATCCAATACTCAGTTGGTGCCAATTTTACACCACATGTACTTACTGTAAATGCTGGCGAGGATGTTACTATGAAGATTATGTCTTTTTCCCAACAAGGATCACGAGGTATATGTGTTCTCTCTGCAAATGGCACGATTTCAAATGTTACACTTCGTCAACCCACATCTTCTGGGGGTACTTTAACATATGAGGGGCGATTTGAGATTCTTTCCTTGTCTGGTTCCTTTATGCCTACTGAGAATGGAGTTACGAAAAGCAGATCTGGTGGGATGAGCGTCTCTTTAGCTGGTCCAGATGGTCGAGTAATGGGAGGAGGACTCGCCGGTTTGCTGATAGCTGCAGGTCCTGTTCAGGTTGTTGTGGGCAGTTTTCTTCCCGGTCACCAGCTCGAGCATAAATCGAAGAAGCCTAGGGTGGAACACATATCAACTGTGACCCCAACACACGTTACTCCTGTTGTCTCTAGTGACGAAATAAGAGTCAGTTTTGGTGGAGTAAAGCCTATAATGACACCTACTGTATTTCATGGAGAGAACATTGTTTCCTTTAACAATGCTCATGACTCTCGGAACTCGTCTGCTGATGATAAAGATCCATTGCCCGATAAGGAGTCTAACCCAAGCCATACGAATACGGAGATTGCATGCTAA 1014 0.4901 MEEKENFGGGHAVVGDVSAAESFHVAPRVETIDFSGASTPTPAPGTGTDGKKKRGRPRKYGPDGKPTAAAGALSPMPISASIPLTGEFSAWKRGKGRSVESIKKSSFKYDFESPGPGPGEGIQYSVGANFTPHVLTVNAGEDVTMKIMSFSQQGSRGICVLSANGTISNVTLRQPTSSGGTLTYEGRFEILSLSGSFMPTENGVTKSRSGGMSVSLAGPDGRVMGGGLAGLLIAAGPVQVVVGSFLPGHQLEHKSKKPRVEHISTVTPTHVTPVVSSDEIRVSFGGVKPIMTPTVFHGENIVSFNNAHDSRNSSADDKDPLPDKESNPSHTNTEIAC 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90654g00012 337 MobiDBLite consensus disorder prediction 311 325 - -
Stsc90654g00012 337 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 30 317 IPR039605 GO:0003680
Stsc90654g00012 337 MobiDBLite consensus disorder prediction 30 73 - -
Stsc90654g00012 337 CDD DUF296 131 245 IPR005175 -
Stsc90654g00012 337 ProSiteProfiles PPC domain profile profile. 127 269 IPR005175 -
Stsc90654g00012 337 FunFam AT-hook motif nuclear-localized protein 1-like 132 263 - -
Stsc90654g00012 337 Pfam Plants and Prokaryotes Conserved (PCC) domain 132 245 IPR005175 -
Stsc90654g00012 337 SUPERFAMILY AF0104/ALDC/Ptd012-like 129 248 - -
Stsc90654g00012 337 MobiDBLite consensus disorder prediction 306 337 - -
Stsc90654g00012 337 Gene3D - 132 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90654g00012 Stsc-Chr90654 111075 115894 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90654g00012 38 260 AT-hook Motif Nuclear Localized (AHL) Family AT5G62260 63.404 1.98e-89 272
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90654g00012 - - gmx:100789179 477.633