Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90654g00006 ATGGCTGAGACCAAAAGAAGCACCATTCGCCACCAACAATTAGAGCTTGCAGAGATACTCCGAGAAGCAGAGCAACGATGGCTTCGACCTAATGAAATAAGCGAGATACTTCGCAATTATCAGAAATTTGAGTTATCAACTCATCCACCTCTCAGGCCTCCAGCTGGATCACTGTTCTTGTTTGATCGAAAAGCACTTCGTTATTTTCGCAAGGATGGTCATAGGTGGAGGAAGAAAAAAGATGGCAAGACTGTTAGAGAAGCTCATGAAAAGTTGAAGGCTGATAGTGTCGATGTCCTGCATTGTTACTATGCACATGGGGAGGATAATGAGAACTTTCAAAGGAGAAGTTATTGGATGCTTGATGAGCAGTTAGAGCACATTGTTCTTGTGCATTATCGTGATATTAAAGAGGGTTCCAAGTCCAGCATCTCACACCCCCCTGCAGCTCCAGTAACCTTGGCTTGTAGCTCTCAAACAAGTTCAATGCCTTCCTCTGTCAAAATAGAGTCACCTATATCTGTCTTTCAAACATCTGTTAGATCAACTGCAAATGAAGTTGAGCAGGCTGGACCAACTTCAGTGTGTGATAATGGGCAATCAGAGAATGGTCCTCAAGCCTTAAGTCATGCTTGGCCTATTGACACTTCAATAACTCACAGTGCATGGCTGCTTGGACCTGAAACCACTGGTTTTGCTGAGTTTATGAAGGACCCTCTTATTTCATGGTCATCTTCTCTCCCTAGCTTTTATCCTGGCACTGGCTTATCTTCATGTGCAACAATAGAGAACTCTAGTAGAATCACATTTGATATGAATGGTAGAGAACTTCATGTTGAAGCAGATCCCAGAAATCAACATGTTCAGAATTCCAGAGATAGGTTCATGACTGATGTGTACATACAGCCAGTTACAGGAATTTCACATGCTGTAAATCAGGTGCAAAAGGAGCATGATTTAGTTTCATTGCATACCCAATTCCATCATCATCCTGTTGCAGCTACAAAGAACCTAGTTGAACAAAACTTCCAAGATGGTGGTAGGGACAATGATGACCCAGAAAATGTTGAATCTAGGGAATTGAAGAAGCTCAATAGTTTTGGAAGGTGGATGGATAAGGAGATAGGTAGAGATTGTAATAATTCCTTGATGGCTTCAGATTCTGGCAGTTACTGGAAATCACTTGATGCTAATAATGAGGACAAGGAGGTATCTAGCTTGGATATGGACTCATTAAGTCCCTATCTTTCCCATGAACAACTGTTTAGTATCATTGACTTTGCTCCGGATTGGGCATATGCTGGGGTTAGAACAAAGGTTCTAATAGTTGGCACATTTCTGGGGAGTAAAAATCTTTCGAGTGAGAAGAAATGGGGATGTATGTTTGGTGAAATTGAGGTTTCAGCTGAGGTATTGGCAGAGAATGTCATACAGTGTCAAACTCCTTTGCATTCACCAGGTCATGTTCCATTCTATGTAACCTGCAGTAATAGGCTAGCCTGCAGTGAGATCAGAGAATTTGAATATCTTGAAAACCCAACTAAATCTGTAAGCCATGCGGGTATTGATATCAAACCAAAAGATGAAGTGCGGTTTGAAGTGCGACTACTTAAACTGCTAGACTTGGGACCTGACAGTATGTATTGGAAATGCTCTGTCACCGAATGTAAAAACTGTAAACTTAAAAGGACAATGTATTTGACTAGAGATGAAAATAAGAATTTCCAGATCGGTGAAAGCAATCACATGAGCTCTAGGGATGTGTTATTTCAAAGATTAGTTAGTGACAAACTTTATGGATGGTTGGTATTTAAGCTTCATGAAGGCGGAAAAGGGCCTAACGTGTTGGACATTGAAGGTCAAGGAGTTATACATTTGGCTGCTGGTCTTGGTTATGTGTGGGCTATGGGCCCTATAGTTTCTGCGGGTATTAGTCCAAACTTCAGAGATGCTCATGGAAGAACAGGACTTCACTGGGCATCATATTTTGGGAGAGAGGAAACTGTGATTGCACTAGTCAAATTAGGTGCAGTCCCAGGTCTTGTTGATGACCCAACATCAGCATATCCTCGAGGACAAACAGCAGCTGATTTAGCTTCAAGTAGAGGGCACAAAGGTATTGCTGGATATCTGGCTGAGGCAGATCTAGAATGTCAATTGTCTAAATTAACTGTCAATGAAAATGAGATGGACAACATTACCACAAGCTTAGCAACTGACAGTGCATTTGAGTCTGCTGATACTGATTCACCGAATATAACAATGGATGAGAAGCATTATCTAAGAGAATCACTTGCTGCTTTTCGAAAATCAGCTTATGCTGCTGCTTCGATCCAAGCAGCCTTTAGAGCAAGATCATTTTGTCAAAGACAGCTAACGAAGAATTGCAGTGATATTTCTGAAGATGCACTTGAACTAGTTGCTGATTCTTTAAACAAGGTTCAGAAGATGGGTCATTTTGAGGATTATCTGCATTCTGCAGCTTTAAAGATTCAAAAGAGATACCGTGGGTGGAAAGGAAGAAAAGATTTTTTGAAAATACGCAACCGTATTGTAAAAATTCAGGCTCATGTTAGAGGTCACCAAGTTCGGAAGCAGTACAAAATAGTTGTTTGGTCAGTTGGCATAGTGGAAAAGGCGATACTGCGTTGGAGACGGAAAGGAGTTGGTCTGCGAGGATTCCGGGTTGTGCAATCAGCTGGGACTGTGTCTGGAGAGCCTGAATATGAATTTCTTAGCATTGGGAGGAGACAGAAATCAGCTGATGTGAAGAAAGCTTTGGATAGAGTTAAGTCCATGGTTCACAACCCAGAGGCCCGTGATCAGTACATGAGGCTTGTCATCAAATCTCAAAATTTTAAGACTGGTGATGATGGTAGCTGTCAACCACAACATGCTGAGTAG 2904 0.416 MAETKRSTIRHQQLELAEILREAEQRWLRPNEISEILRNYQKFELSTHPPLRPPAGSLFLFDRKALRYFRKDGHRWRKKKDGKTVREAHEKLKADSVDVLHCYYAHGEDNENFQRRSYWMLDEQLEHIVLVHYRDIKEGSKSSISHPPAAPVTLACSSQTSSMPSSVKIESPISVFQTSVRSTANEVEQAGPTSVCDNGQSENGPQALSHAWPIDTSITHSAWLLGPETTGFAEFMKDPLISWSSSLPSFYPGTGLSSCATIENSSRITFDMNGRELHVEADPRNQHVQNSRDRFMTDVYIQPVTGISHAVNQVQKEHDLVSLHTQFHHHPVAATKNLVEQNFQDGGRDNDDPENVESRELKKLNSFGRWMDKEIGRDCNNSLMASDSGSYWKSLDANNEDKEVSSLDMDSLSPYLSHEQLFSIIDFAPDWAYAGVRTKVLIVGTFLGSKNLSSEKKWGCMFGEIEVSAEVLAENVIQCQTPLHSPGHVPFYVTCSNRLACSEIREFEYLENPTKSVSHAGIDIKPKDEVRFEVRLLKLLDLGPDSMYWKCSVTECKNCKLKRTMYLTRDENKNFQIGESNHMSSRDVLFQRLVSDKLYGWLVFKLHEGGKGPNVLDIEGQGVIHLAAGLGYVWAMGPIVSAGISPNFRDAHGRTGLHWASYFGREETVIALVKLGAVPGLVDDPTSAYPRGQTAADLASSRGHKGIAGYLAEADLECQLSKLTVNENEMDNITTSLATDSAFESADTDSPNITMDEKHYLRESLAAFRKSAYAAASIQAAFRARSFCQRQLTKNCSDISEDALELVADSLNKVQKMGHFEDYLHSAALKIQKRYRGWKGRKDFLKIRNRIVKIQAHVRGHQVRKQYKIVVWSVGIVEKAILRWRRKGVGLRGFRVVQSAGTVSGEPEYEFLSIGRRQKSADVKKALDRVKSMVHNPEARDQYMRLVIKSQNFKTGDDGSCQPQHAE 967
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90654g00006 967 ProSiteProfiles CG-1 DNA-binding domain profile. 16 142 IPR005559 GO:0003677
Stsc90654g00006 967 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 818 874 IPR027417 -
Stsc90654g00006 967 SMART CG_1_2 19 137 IPR005559 GO:0003677
Stsc90654g00006 967 FunFam Calmodulin-binding transcription activator 2 417 514 - -
Stsc90654g00006 967 ProSiteProfiles Ankyrin repeat profile. 652 684 IPR002110 GO:0005515
Stsc90654g00006 967 ProSiteProfiles Ankyrin repeat region circular profile. 652 677 - -
Stsc90654g00006 967 SUPERFAMILY E set domains 424 509 IPR014756 -
Stsc90654g00006 967 SMART ANK_2a 691 720 IPR002110 GO:0005515
Stsc90654g00006 967 SMART ANK_2a 652 681 IPR002110 GO:0005515
Stsc90654g00006 967 SUPERFAMILY Ankyrin repeat 598 714 IPR036770 -
Stsc90654g00006 967 ProSiteProfiles IQ motif profile. 824 853 IPR000048 GO:0005515
Stsc90654g00006 967 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 17 951 - -
Stsc90654g00006 967 ProSiteProfiles IQ motif profile. 847 871 IPR000048 GO:0005515
Stsc90654g00006 967 Pfam IQ calmodulin-binding motif 850 868 IPR000048 GO:0005515
Stsc90654g00006 967 Pfam IQ calmodulin-binding motif 825 844 IPR000048 GO:0005515
Stsc90654g00006 967 SMART iq_5 823 845 IPR000048 GO:0005515
Stsc90654g00006 967 SMART iq_5 846 868 IPR000048 GO:0005515
Stsc90654g00006 967 Gene3D - 600 806 IPR036770 -
Stsc90654g00006 967 Gene3D - 822 870 - -
Stsc90654g00006 967 Gene3D Immunoglobulins 417 516 IPR013783 -
Stsc90654g00006 967 Pfam CG-1 domain 22 135 IPR005559 GO:0003677
Stsc90654g00006 967 FunFam Calmodulin-binding transcription activator 2 823 871 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90654g00006 Stsc-Chr90654 57343 62991 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90654g00006 120 960 CAMTA Transcription Factor Family AT5G09410 35.456 1.51e-156 482
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Stsc90654g00006 CG-1 1e-48 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90654g00006 K21596 - gmx:100818336 1328.54