Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90653g00022 ATGGAGAAGTATGAGATTCTACAACAGATTGGCAAAGGTTCCTTTGGTTCTGCTCTTCTTGTTAGGCACAGGCATGAAAACAGAAAGTATGTTCTCAAGAAGATCAAACTTGCACGCCAAACTGATAGAGCTCGTAGATCTGCTCATCAAGAGATGGAGCTCATCTCTAAAGTTCGGAATCCGTTTATTGTCGAATATAAAGATTCCTGGGTAGAAAAGGGTTGCTTTGTATGTATCATCATTGGCTATTGTGAAGGTGGAGATATGGCTGAAGCTATAAAAAAGTCTAATAGTGTTCTTTTTTCAGAAGAGAAGCTTTGTAAGTGGCTTGTTCAACTGTTGATGGCACTTGATTACTTGCATGCGAATCATATTCTGCACCGTGATGTCAAGGTGAATGATGATTACTATGAGTTCAAGTTATGCTGCTAG 432 0.3935 MEKYEILQQIGKGSFGSALLVRHRHENRKYVLKKIKLARQTDRARRSAHQEMELISKVRNPFIVEYKDSWVEKGCFVCIIIGYCEGGDMAEAIKKSNSVLFSEEKLCKWLVQLLMALDYLHANHILHRDVKVNDDYYEFKLCC 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90653g00022 143 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Stsc90653g00022 143 Pfam Protein kinase domain 4 132 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90653g00022 143 Gene3D Phosphorylase Kinase; domain 1 1 78 - -
Stsc90653g00022 143 FunFam Serine/threonine-protein kinase Nek2 1 83 - -
Stsc90653g00022 143 ProSiteProfiles Protein kinase domain profile. 4 143 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90653g00022 143 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 131 - -
Stsc90653g00022 143 Gene3D Transferase(Phosphotransferase) domain 1 79 134 - -
Stsc90653g00022 143 SMART serkin_6 4 137 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90653g00022 143 SUPERFAMILY Protein kinase-like (PK-like) 1 132 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90653g00022 Stsc-Chr90653 148400 150034 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90653g00022 1 131 AGC Kinase Gene Family AT3G12690 28.788 1.14e-14 67.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Stsc90653g00022 Pkinase 1.2e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90653g00022 K08857 - cpap:110809666 253.062