Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Stsc90653g00003 | ATGGTGGTATATTTTATCTCTCTACCAGTGCCCAATGGTTTCAAGGTAGAAGCTGTCACTGTCAATAAAACTAATAAATACTTTGTGACTGCTTCACTTGATGGAACTTGGTGCCTTTATGATCTATCCTCAGGAACATGTCTGACCCAGGTTTCAGACACTTCAAGTTCTTCTGAAGGCTATACATCTGCAGCTTTTCATCCAGATGGGGTCATTCTTGGAGCTGGCACGACAGATGCTCTTGTTAAGATCTGGGATGTAAAACGTCAGGAAGTTGCTGCTACATTGGAAGGACATGCAGGACCAGTGACTGCCATATCTTTCTCTGAAAATGGGTACTTCCTTGCGACTGCGGCTCATGATGGTGTAAAGCTTTGGGATTTACGTAAACCAAATATGAACTTCCGAAATTTTGCTCCATATGTCTCAGAAACTCCAACAAATTCAGTTGAGTTCGATCACAGTGGATCTTTCCTTGCAGTTGCAGGCTCTGATATCAGGATTTACCAAGTCGCAAATATGAAATCTGAATGGAACTGTATCAAAACTTTCCCTGATTTATCAGGAACAGGGAAAGACACATGTGTAAAATTTGGTCCAGATGCAAAATATATAGCAGCGGGATCAATGGACCGGAATCTTCGAATATTTGGTCGTCTTAGGGTCGAATTGTATTTAGTTCCTTTTTTTTTTGGGTCTGTATTTCGTTCATGA | 714 | 0.4104 | MVVYFISLPVPNGFKVEAVTVNKTNKYFVTASLDGTWCLYDLSSGTCLTQVSDTSSSSEGYTSAAFHPDGVILGAGTTDALVKIWDVKRQEVAATLEGHAGPVTAISFSENGYFLATAAHDGVKLWDLRKPNMNFRNFAPYVSETPTNSVEFDHSGSFLAVAGSDIRIYQVANMKSEWNCIKTFPDLSGTGKDTCVKFGPDAKYIAAGSMDRNLRIFGRLRVELYLVPFFFGSVFRS | 237 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Stsc90653g00003 | 237 | Gene3D | - | 11 | 219 | IPR015943 | GO:0005515 | |
| Stsc90653g00003 | 237 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 96 | 136 | IPR001680 | GO:0005515 | |
| Stsc90653g00003 | 237 | PANTHER | PRE-MRNA-PROCESSING FACTOR 19 | 16 | 218 | IPR038959 | GO:0000398|GO:0000974|GO:0006281|GO:0061630 | |
| Stsc90653g00003 | 237 | ProSitePatterns | Trp-Asp (WD) repeats signature. | 73 | 87 | IPR019775 | - | |
| Stsc90653g00003 | 237 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 96 | 129 | - | - | |
| Stsc90653g00003 | 237 | SUPERFAMILY | WD40 repeat-like | 14 | 217 | IPR036322 | GO:0005515 | |
| Stsc90653g00003 | 237 | Pfam | WD domain, G-beta repeat | 179 | 217 | IPR001680 | GO:0005515 | |
| Stsc90653g00003 | 237 | Pfam | WD domain, G-beta repeat | 62 | 86 | IPR001680 | GO:0005515 | |
| Stsc90653g00003 | 237 | Pfam | WD domain, G-beta repeat | 94 | 127 | IPR001680 | GO:0005515 | |
| Stsc90653g00003 | 237 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 54 | 88 | - | - | |
| Stsc90653g00003 | 237 | SMART | WD40_4 | 44 | 86 | IPR001680 | GO:0005515 | |
| Stsc90653g00003 | 237 | SMART | WD40_4 | 1 | 41 | IPR001680 | GO:0005515 | |
| Stsc90653g00003 | 237 | SMART | WD40_4 | 134 | 170 | IPR001680 | GO:0005515 | |
| Stsc90653g00003 | 237 | SMART | WD40_4 | 177 | 218 | IPR001680 | GO:0005515 | |
| Stsc90653g00003 | 237 | SMART | WD40_4 | 89 | 127 | IPR001680 | GO:0005515 | |
| Stsc90653g00003 | 237 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 54 | 95 | IPR001680 | GO:0005515 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Stsc90653g00003 | Stsc-Chr90653 | 23556 | 36467 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Stsc90653g00003 | 15 | 218 | U-box Gene Family | AT1G04510 | 67.805 | 9.19e-93 | 280 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Stsc90653g00003 | K10599 | - | gmx:100527039 | 352.058 |