Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90653g00002 ATGGAACCATCATCATCATTTCAATCAGAAGCAACAGCACCACAAGCAAAGGAGGGGATTCATGAAACAGGGCCACCACCATTCTTGACCAAAACCTTTGATGTGGTGGATGATCCAACAACCAACCATGTTGTTTCTTGGAGCAGAGGAGGTACAAGCTTTGTTGTTTGGGATCTACACACCTTCTCCAAAACCCTTCTTCCCAAATACTTCAAGCACAACAACTTCTCAAGCTTTGTAAGGCAACTCAATACTTATGGCTTTAAGAAAATTGATCCAGAAAAATGGGAATTTGCAAATGAAGGATTTATCAAAGGTCACAAGCATCTCTTGAAGACCATAAGGAGAAGGAAACCACCTTCACACCAACCAATTCCTTCCCAACAAGGCTATGATTATGGTGATCACTCCCTCGAGCTCGGCCGATTAGGCCTATTCAGAGAGATCGACCAGTTGCGGCGCGACAAGCGGGTTTTGATGATGGAGCTTTTGAGCCTTAGAGCGCAACAAGACAACACAAAGTTGTACATTCAAGAAATGGAGCAAAGGTTACAAGGGACAGAAGTTAAGCAAAAACAAATGATGGCATTCTTAGCAAGAGCAATGAAAAACCCTTCATTGATTCAACAATTATTAGTCCAACATAAAGAGAATAAAATTAATGTACTTGAATTAGATGATGATATTATGAATAATAATAATAAGAGGGTAAGGTCAATTGAGCAAGGAGAATCAAGCAATATTAATAGTACTAGTGTTAATAAAGTTGAGCCTTTAGAATTTGGTGTTTCAGAGTTGGAAGTGTTGGCTATGGAAATGCAAGGTTTTGGTAGAGGGAATAGGGGGAATTTGGAACATGAAGAGAGGCTTCAAAGGGAAATTGATGAAGGGTTTTGGGAAGAGCTTATGTTTAATGAGAAATTTGAAGGAAAATGA 936 0.3942 MEPSSSFQSEATAPQAKEGIHETGPPPFLTKTFDVVDDPTTNHVVSWSRGGTSFVVWDLHTFSKTLLPKYFKHNNFSSFVRQLNTYGFKKIDPEKWEFANEGFIKGHKHLLKTIRRRKPPSHQPIPSQQGYDYGDHSLELGRLGLFREIDQLRRDKRVLMMELLSLRAQQDNTKLYIQEMEQRLQGTEVKQKQMMAFLARAMKNPSLIQQLLVQHKENKINVLELDDDIMNNNNKRVRSIEQGESSNINSTSVNKVEPLEFGVSELEVLAMEMQGFGRGNRGNLEHEERLQREIDEGFWEELMFNEKFEGK 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90653g00002 311 PRINTS Heat shock factor (HSF) domain signature 28 51 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc90653g00002 311 PRINTS Heat shock factor (HSF) domain signature 79 91 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc90653g00002 311 PRINTS Heat shock factor (HSF) domain signature 66 78 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc90653g00002 311 Coils Coil 149 169 - -
Stsc90653g00002 311 SMART hsfneu3 24 117 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc90653g00002 311 ProSitePatterns HSF-type DNA-binding domain signature. 67 91 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc90653g00002 311 Gene3D - 20 118 IPR036388 -
Stsc90653g00002 311 SUPERFAMILY "Winged helix" DNA-binding domain 24 117 IPR036390 -
Stsc90653g00002 311 Pfam HSF-type DNA-binding 28 117 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc90653g00002 311 FunFam Heat shock transcription factor 1 21 118 - -
Stsc90653g00002 311 MobiDBLite consensus disorder prediction 1 25 - -
Stsc90653g00002 311 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 14 245 IPR027725 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90653g00002 Stsc-Chr90653 15300 17472 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90653g00002 18 308 HSF AT3G51910 52.721 1.02e-97 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Stsc90653g00002 HSF_DNA-bind 1.7e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90653g00002 K09419 - gmx:100811945 375.17