Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90652g00015 ATGGAGTGGAGCAGGGGCAACACCCTAGCCCGGGGCTCCACCGCCACCGTCTCCATTGCCACCACCATCCACTCTCCTCACGTTTTTGCCGTCAAGTCAGCGGACTTACACCGCTCGGAGCACCTCAAGAAAGAACAGGAGATTCTCTCCACGCTCAACTCTCCTCAAATTGTGGCCTACAAAGGCTGTGATGTCACGCTAGAGAACGGTGCCTCGTTTTACAACATTTTCATGGAGTACGCTCCTCTGGGAACCCTTGCCGACGCTGTTCGGAGGCACAAGGGTGGCTTAAGCTTGGCTCTGGTGGCGCGTTACACGCATCAAATGTTACTTGGGCTCAAGTACCTTCACTCCCAAGGAATAGTGCATTGCGATGTGAAGGGGCAGAACATCTTGGTGACAGAGCAAGGAGCCAAGATAGCGGATTTTGGTTACTCTCGGAGGGTGGCGGGTTCTGGTGGTGGGGCCGTGATTGCAGGGACGCCTGCATTCATGGCACCTGAAGTGGCACGTGGGGAGGAGCAGGGGTTCCCTGCTGACGTGTGGGCACTTGGGTGTACAGTCTTGGAGACGATAACAGGGCAGCCACCCTGGTACTATGCATGTGATGATGACCCTGTTACTGTGCTTTATCGGATTGGTTTCTCCGACGAGGTGCCAGAAATTCCAAGCCATGTATCCGAGGAAGGTAGGGATTTCTTGGCGAAATGCTTCAAGAGGGAGCCTTGCGAGAGGTGGTCTGTTGAGGAGCTTCTTGGGCATAGATTTGTTTATGCAGTTGAGGAGCATTTTGATTTTGAACTCGAGTTGGGTGGCTCTGATTTGCATACTCCAATGAGTGTGTTGGATCCAGAATTTTGGGAGAAGATGGAGACAGAGCAGGATATTACACAGACAGCAACACCTGATTGTTGTTGTTCGTGGAGTCCTGTTAGTCCTAGAGACAGAATTCGTGGGTTGTGTGGAGACGATACAATGATGTTTGGTGCTTGGCAATGGGATGATGGGTGGATCAGTGTGAGAAGCAATGAGGTGAACGAGTTTGAAGGGTGCTCCAGTGGAAGTAGCATTGGCCAAGAGCCTAATGGAAAAACAAAGCATTGTGGATCAGACACTGTTTACAATACACTCTGA 1134 0.515 MEWSRGNTLARGSTATVSIATTIHSPHVFAVKSADLHRSEHLKKEQEILSTLNSPQIVAYKGCDVTLENGASFYNIFMEYAPLGTLADAVRRHKGGLSLALVARYTHQMLLGLKYLHSQGIVHCDVKGQNILVTEQGAKIADFGYSRRVAGSGGGAVIAGTPAFMAPEVARGEEQGFPADVWALGCTVLETITGQPPWYYACDDDPVTVLYRIGFSDEVPEIPSHVSEEGRDFLAKCFKREPCERWSVEELLGHRFVYAVEEHFDFELELGGSDLHTPMSVLDPEFWEKMETEQDITQTATPDCCCSWSPVSPRDRIRGLCGDDTMMFGAWQWDDGWISVRSNEVNEFEGCSSGSSIGQEPNGKTKHCGSDTVYNTL 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90652g00015 377 CDD STKc_MAPKKK 2 257 - -
Stsc90652g00015 377 ProSitePatterns Serine/Threonine protein kinases active-site signature. 121 133 IPR008271 GO:0004672|GO:0006468
Stsc90652g00015 377 Gene3D Transferase(Phosphotransferase) domain 1 88 300 - -
Stsc90652g00015 377 SUPERFAMILY Protein kinase-like (PK-like) 3 300 IPR011009 -
Stsc90652g00015 377 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 353 - -
Stsc90652g00015 377 ProSiteProfiles Protein kinase domain profile. 3 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90652g00015 377 Pfam Protein kinase domain 6 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90652g00015 377 Gene3D Phosphorylase Kinase; domain 1 1 87 - -
Stsc90652g00015 377 SMART serkin_6 3 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90652g00015 Stsc-Chr90652 102672 103870 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90652g00015 1 343 MAP Kinase Kinase Kinase AT1G05100 46.591 6.17e-98 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Stsc90652g00015 Pkinase 2.7e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90652g00015 K20716 - gmx:100802174 375.555