LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc90652g00013	ATGTTCCCAACCTTGGGAGCCTTTTCTGGGAACCCCGCCAATAACACCGATCCATCCATGTCCTCCTCCGATCATCATAACAATCGAGCGGTTGTGGGCGAGGTGGACTTCTTCTCCGAGAGAAACACATCATCTTCTTCCGTTAAGAACCAGATTTCTACTCATGGAAGCTCTCCCGAGTTTAATAATCTCCACGTAAATACCGGTCTGCAACTCCTTACTGCCAACAGTAAAAGCGATCAATCTACGGTGGATGATGGGGTTTCATCGGACGAAGATAAGCGCCCCAAGATCACCCAGCTGGCACAAGTGCGAGAAGAACTTAGACGTGTGATTTCAGAGAACCAAGAGCTGAAGGAGACGCTCACCCATATGAGGAGCAGCTATGCGAATTTGCAAATGCAAGTTGTCTCATTAATGCAACACCAACAGAAACACCAAGTTCCCGAGACAGCCACAGAAAATCACGAGGTAGCGAAAGTAAGAGGTGATGATGAGAAAAAGGAAGGAGGTAGCAGTGGAGGCGGAGGAATGATACCAAGACAGTTCCTTGATTTAGTTGCAAGTGGCACAGCGGAAGTAGAAGATCAAGTATCTAATTCTTCTTCAGAAGAAAGAACTCGATCCAGCACACCTCAAAACCATAAAAACAATGGCAAGATAGAGACTACTACTGCTGGAGAGGATTTAGAATCATCACAACAGGGTTGGGATAATAATCCCAACAAGCTTCAGAGATTGAGCCCTACTGCCACCGATCAATCCACTGCAGAAGCCACCATGCGTAAAGCTCGTGTCTCTGTCCGCGCCCGTTCGGAAGCCCCTATGATCAGCGATGGGTGCCAATGGCGAAAATATGGGCAGAAGATGGCTAAGGGAAACCCTTGTCCTCGAGCATATTACAGATGCACCATGGCAGTTGGATGCCCAGTTCGTAAACAAGTTCAACGTTGTGCGGAGGATAGAACAATTTTGATAACGACATACGAAGGCACGCACAACCACCCACTGCCGCCTGCAGCGATGGCGATGGCGTCGACGACGGCGGCAGCGGCAAGCATGCTTCTGTCCGGGTCAATGTCGAGCGCAGACGGAATAATGAACTCGAGCATGATGGCAAGAGCGATTCTGCCGTCTTCAAGCATGGCAACACTGTCGGCATCAGCGCCATTTCCAACGGTAACGCTCGATCTCACGCACCAACCAAACGCGTTGCCTTTGCAGTACCACCAAAGGCAGCAACATCCTCACGCGCAATTGCCGCAAGTGATTGCACAAGCGCTCTATAACCAATCCAAATTCTCCGGCCTTCAACTCTCTCAAGATGTTGGCTCTTCCCAAGCTTCGAGGCTACCGTTGCACCCTAACCAACATCCCTTGCTCGCCGACAAGGTAACTGCCCTCACCAACGATCCTAACTTCACGGCGGTACTCGCAGCCGCCATTTCCTCCATCATCGGTGGAGCTCATCAAAATAATAATCCCAACAACTCCAACTCCGACGCCAATCCCAATATCATCAACAGTGCTACAGTCAGCAGCTTTTCAGGAAATTAG	1557	0.4978	MFPTLGAFSGNPANNTDPSMSSSDHHNNRAVVGEVDFFSERNTSSSSVKNQISTHGSSPEFNNLHVNTGLQLLTANSKSDQSTVDDGVSSDEDKRPKITQLAQVREELRRVISENQELKETLTHMRSSYANLQMQVVSLMQHQQKHQVPETATENHEVAKVRGDDEKKEGGSSGGGGMIPRQFLDLVASGTAEVEDQVSNSSSEERTRSSTPQNHKNNGKIETTTAGEDLESSQQGWDNNPNKLQRLSPTATDQSTAEATMRKARVSVRARSEAPMISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGTHNHPLPPAAMAMASTTAAAASMLLSGSMSSADGIMNSSMMARAILPSSSMATLSASAPFPTVTLDLTHQPNALPLQYHQRQQHPHAQLPQVIAQALYNQSKFSGLQLSQDVGSSQASRLPLHPNQHPLLADKVTALTNDPNFTAVLAAAISSIIGGAHQNNNPNNSNSDANPNIINSATVSSFSGN	518

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc90652g00013	518	MobiDBLite	consensus disorder prediction	74	98	-	-
	Stsc90652g00013	518	MobiDBLite	consensus disorder prediction	8	26	-	-
	Stsc90652g00013	518	Pfam	WRKY DNA -binding domain	279	336	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Stsc90652g00013	518	MobiDBLite	consensus disorder prediction	193	261	-	-
	Stsc90652g00013	518	MobiDBLite	consensus disorder prediction	493	518	-	-
	Stsc90652g00013	518	PANTHER	WRKY TRANSCRIPTION FACTOR 36-RELATED	68	499	IPR044810	GO:0003700
	Stsc90652g00013	518	MobiDBLite	consensus disorder prediction	149	171	-	-
	Stsc90652g00013	518	MobiDBLite	consensus disorder prediction	1	26	-	-
	Stsc90652g00013	518	SMART	WRKY_cls	277	337	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Stsc90652g00013	518	FunFam	probable WRKY transcription factor 31	262	339	-	-
	Stsc90652g00013	518	Gene3D	WRKY domain	262	339	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Stsc90652g00013	518	ProSiteProfiles	WRKY domain profile.	272	338	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Stsc90652g00013	518	Coils	Coil	101	135	-	-
	Stsc90652g00013	518	MobiDBLite	consensus disorder prediction	142	271	-	-
	Stsc90652g00013	518	SUPERFAMILY	WRKY DNA-binding domain	270	338	IPR036576	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc90652g00013	Stsc-Chr90652	93234	95811	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc90652g00013	27	499	WRKY Transcription Factor Family	AT1G62300	53.543	3.37e-141	416

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Stsc90652g00013		WRKY	5.2e-24	CL0274

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc90652g00013	-		-	pvu:PHAVU_006G147800g	535.028