Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90652g00011 ATGGCCACCTCCTTAACCCTCTTACTTTCTTCATTATTCTTCCTCTTAACCTTTGTTAATGCATACAACACAACCCAACTTCTCTCAAACTATCTCCACAAGACTCCCAAGAATAATAATAATAAATCGCACCTCCTCAACACCATAGACTCTTGCCGCCGAGCCCAGACTAATAACTGGGCCGCCAATCCACACGCCTTGGCCAATTGCGCAATTGGTTTTGGCAAAGACTCCATTGGAGGCAAATATGGTCAATTATACATTGTAACCGATCCTTCAGATGATGCAGTGAATCCAAGAGAGGGCACACTTCGTTATGGTGCAATCCAATGGGAGCCACTCTGGATAATGTTCGAGAGAGACATGGTTATTAAGCTTGAGAATGAACTCATAGTTAATAGCTACAAGACCATTGATGGAAGAGGAGCCAGAGTTGAGATATCAAATGGTCCTTGCATTACAATACAAGGTGTTAGCAATGTGATTATTCATGGAATTAGAATCCATGATTGTAAACCGGGTAAGCCTGGCCTCGTCAGAAGTAGCCCTGAGCATGTTGGCCACCGGCAAGGCTCCGATGGTGACGGCATCAGCATATTCTCATCATCCAATATTTGGGTTGATCATTGCTTCTTCGCAAGTTGCGCTGATGGACTAATTGATATTATTCATGCTTCAACTGCCATTACCATTTCTAACAACTATTTCACTCAGCATGACAAAGTTATGTTATTAGGACACAATGATCAATACACTGCAGATAAAATAATGAAGGTAACAATAGCCTTCAACCGTTTTGCTAGTGGCCTAACTGAAAGGATGCCAAGGGTAAGATTTGGTTACGCCCATGTGGTGAACAACCGGTATGATGAGTGGAAAATGTATGCTATAGGAGGGAGTTCTAATCCAACCATTTTAAGCGAAGGGAACTATTATATAGCACCAAATGACTATAATGCAAAACAGATTACAAAGAGAGAAGCGAAGCAAAGCTGGAAGAACTGGAAATGGAGGTCTAGCAAGGATAAATTCGTAAATGGTGCATATTTTGTGCCATCTGGGTATGGGAGTTGTGCCCCAAATTATTCTCTTACTCAATCTTTTAATGCTGTTAGAGCTCGCTTGGTGCCAGCAATAACTCTCAATTCAGGCCCCTTAAGTTGTGTTGTTGGCAGAGCATGTTAA 1185 0.4194 MATSLTLLLSSLFFLLTFVNAYNTTQLLSNYLHKTPKNNNNKSHLLNTIDSCRRAQTNNWAANPHALANCAIGFGKDSIGGKYGQLYIVTDPSDDAVNPREGTLRYGAIQWEPLWIMFERDMVIKLENELIVNSYKTIDGRGARVEISNGPCITIQGVSNVIIHGIRIHDCKPGKPGLVRSSPEHVGHRQGSDGDGISIFSSSNIWVDHCFFASCADGLIDIIHASTAITISNNYFTQHDKVMLLGHNDQYTADKIMKVTIAFNRFASGLTERMPRVRFGYAHVVNNRYDEWKMYAIGGSSNPTILSEGNYYIAPNDYNAKQITKREAKQSWKNWKWRSSKDKFVNGAYFVPSGYGSCAPNYSLTQSFNAVRARLVPAITLNSGPLSCVVGRAC 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90652g00011 394 PANTHER PECTATE LYASE 18-RELATED 30 392 IPR045032 GO:0030570
Stsc90652g00011 394 Gene3D - 46 387 IPR012334 -
Stsc90652g00011 394 SMART amb_all 121 318 IPR002022 -
Stsc90652g00011 394 Pfam Pectate lyase 129 312 IPR002022 -
Stsc90652g00011 394 SUPERFAMILY Pectin lyase-like 68 391 IPR011050 -
Stsc90652g00011 394 PRINTS Pollen allergen Amb family signature 70 87 IPR018082 -
Stsc90652g00011 394 PRINTS Pollen allergen Amb family signature 93 118 IPR018082 -
Stsc90652g00011 394 PRINTS Pollen allergen Amb family signature 273 292 IPR018082 -
Stsc90652g00011 394 PRINTS Pollen allergen Amb family signature 335 359 IPR018082 -
Stsc90652g00011 394 PRINTS Pollen allergen Amb family signature 365 388 IPR018082 -
Stsc90652g00011 394 PRINTS Pollen allergen Amb family signature 129 145 IPR018082 -
Stsc90652g00011 394 PRINTS Pollen allergen Amb family signature 193 214 IPR018082 -
Stsc90652g00011 394 PRINTS Pollen allergen Amb family signature 295 314 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90652g00011 Stsc-Chr90652 82208 83738 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90652g00011 4 388 Polysaccharide Lyase AT4G22080 63.077 0.0 520
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90652g00011 K01728 - gmx:100807483 596.66