Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90652g00001 ATGAGTCAACTGGGTGTGATGCTGCAGGAGTCCTTGCGAGCTGAGACGGAAGCAAGGACCATTCTGGGTCTGCTAAGGGACCAGATGGAGGGTGTTGTCCACACAGGACAACGCAGACGGAGAACTCTCAAAGACCGCTTCAGATTCAACGGAATGGGTTGCTGCGGTGCCACCTGGGTTTTCCGTCCCTCTCCCCTCACCCTCACTCACGCTGCACACCAACAACAACAACAAGAAGAAATAGCTGGGGGTGGAGCTGAAGCTGGAGGAGAAACGGATCCGGGTCAAGATCCGACCCCGGATGGACCCGAATGCGAACGGCCCTCTACGGGGATGAATCTGGCGGCAGCATTGGCGGCGGAGCGTGAGTTGCGGGGTTCGCAGGAGGAAGGGGAGAGGGAGGTCGGGGGATCGGAGACGCCGTGGAGAGTGTCTTTGATGCGGCTGCTAGAGGAAACAGAAGGAGGAGGAGGAGAAGGGGAAAGGGAAAGGGAAACGGGTGGGGATAGTGAAGGGGGTGGTGATTGGGTGTGCTGCGTGTGCATGGGAAGGAAGAAAGGCGCGGCGTTCATACCATGTGGCCACACGTTCTGCAGAGTGTGCTGTCGAGAGGTCTGGCTGAACCGGGGCACCTGCCCGCTTTGTAACCGTTCCATTCTCGAGATTCTCGATATCTTCTGA 681 0.5815 MSQLGVMLQESLRAETEARTILGLLRDQMEGVVHTGQRRRRTLKDRFRFNGMGCCGATWVFRPSPLTLTHAAHQQQQQEEIAGGGAEAGGETDPGQDPTPDGPECERPSTGMNLAAALAAERELRGSQEEGEREVGGSETPWRVSLMRLLEETEGGGGEGERERETGGDSEGGGDWVCCVCMGRKKGAAFIPCGHTFCRVCCREVWLNRGTCPLCNRSILEILDIF 226
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Stsc90652g00001 226 MobiDBLite consensus disorder prediction 152 171 - -
Stsc90652g00001 226 MobiDBLite consensus disorder prediction 70 109 - -
Stsc90652g00001 226 CDD RING-HC 178 215 - -
Stsc90652g00001 226 Pfam Zinc finger, C3HC4 type (RING finger) 177 220 - -
Stsc90652g00001 226 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 174 225 IPR013083 -
Stsc90652g00001 226 MobiDBLite consensus disorder prediction 154 170 - -
Stsc90652g00001 226 PANTHER OS01G0917900 PROTEIN 5 226 - -
Stsc90652g00001 226 ProSiteProfiles Zinc finger RING-type profile. 178 216 IPR001841 -
Stsc90652g00001 226 SMART ring_2 178 215 IPR001841 -
Stsc90652g00001 226 SUPERFAMILY RING/U-box 174 223 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Stsc90652g00001 Stsc-Chr90652 3116 3796 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90652g00001 21 226 C3H Transcription Factor Family AT4G22250 53.302 1.70e-58 182
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90652g00001 - - gmx:106799504 238.81