Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90651g00023 ATGAAACACAGTCAAGCAGAAAAGAGACGGAGGATCAGAATCAACACTCAATATGAGGCCCTCAAAAACCTCTTCCAAAACAAAACAAAAACGGACAAGGCATCATTATTGGCAACTACTGTTGAAATGGTTAAGAATTTGAGAAAAAATAGTATTCTAAAGGAAGCTTCTAGTAGCTCAAGGAAGGAAGTGAATAAAGTTGCAAACCAGAAGAAAATGCAAGAAGCTTGTGGCCCAAGAATTGAAGATGTGTTTCCTAGTTGGGAAGACAAGTGGAGTCTAAAACATGAAGAGGGTCTAATGAAGGCTACATTGAATTGTGAGGATAAACCAGGATTGATGTCAACAATAGCTAAGGCAATGAGGTCAGTGGATGCCAAGGTTGTAAAGGCTGAGATGGTGAATGTTGGAGGAAGAACTAGGGTTGTGTTGTGGGTCAAAGATTCCAATGGTGATCGTAAATGTGAAGAGATTCTCAAGAGGACACTCAGTACTCTTATGCAAAGGCCAGTCCCTAAGAAGAGGCGTTATACTCAATAA 540 0.4019 MKHSQAEKRRRIRINTQYEALKNLFQNKTKTDKASLLATTVEMVKNLRKNSILKEASSSSRKEVNKVANQKKMQEACGPRIEDVFPSWEDKWSLKHEEGLMKATLNCEDKPGLMSTIAKAMRSVDAKVVKAEMVNVGGRTRVVLWVKDSNGDRKCEEILKRTLSTLMQRPVPKKRRYTQ 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90651g00023 179 Gene3D - 1 60 IPR036638 GO:0046983
Stsc90651g00023 179 PANTHER TRANSCRIPTION FACTOR BHLH30 2 173 IPR045847 GO:0003700|GO:0006355
Stsc90651g00023 179 Pfam Helix-loop-helix DNA-binding domain 2 47 IPR011598 GO:0046983
Stsc90651g00023 179 ProSiteProfiles ACT domain profile. 102 179 IPR002912 -
Stsc90651g00023 179 SMART finulus 4 53 IPR011598 GO:0046983
Stsc90651g00023 179 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 2 49 IPR036638 GO:0046983
Stsc90651g00023 179 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 1 47 IPR011598 GO:0046983
Stsc90651g00023 179 CDD ACT_UUR-ACR-like 104 168 - -
Stsc90651g00023 179 SUPERFAMILY ACT-like 104 163 IPR045865 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90651g00023 Stsc-Chr90651 193252 194089 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90651g00023 3 150 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G40200 35.811 9.72e-20 81.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc90651g00023 HLH 4.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90651g00023 - - aip:107639898 322.783