Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90651g00016 ATGCTGGTTCATTCTGTGTCTCATATATATAATTGTGAAAAAGAAGGTGTAAAGTTGATTACTTTGTTGTTTGTTGTTGAAAAAGAAGATCAACGATCGATGGCTCGGGAGAAGATTCAGATAAAGAAGATAGACAACGCGACGGCAAGGCAGGTGACATTCTCGAAGAGAAGGAGAGGGCTGTTCAAGAAAGCGGAGGAGCTGTCGGTTCTGTGCGATGCGGATGTTGCCCTCATCGTCTTCTCTTCCACCGGCAAGCTCTTTCACTACTCCAGCTCAAGTATGAGGGAAATACTTGAAAGGCATCATTTGCACTCAAAGAACCTGGCAAAGCTGGATCAACCCTCTCTTGAATTGCAGTTAGCTGAAAACAGTAACTACACCAGACTTAGCAAGGAAGTTGCTGAGAAGAGCCATAAACTAAGGCAGCTGAGAGGAGAGGATCTTCAAGGCTTAAATATTGAAGAATTACAACAATTGGAGAGGTCTCTTGAAACTGGATTAGGCCGCGTAATAGAAAAGAAGGGAGAGAAGATTATGAGTGAGATCACTGAACTCCAAAGAAAGGGAATGCAATTGGTGGAAGAGAACGAGCGACTAAGGCGTCAAGTGGTGGAGATTACTAATGGGAAAGGGCATAATCATTTTGGTGGTGAATCTGAGATCTTAGTTGGGGAGGAAGGCCAGTCTTCAGAGTCTGTTACAAACGTTTGCAACAACACCACCATCAACAATAATAATGGACCTTCACAGGACTATGATAGTTCAGAAATTTCACTCAAGTTGGGGCTATCATATTCTGGCTAA 807 0.4312 MLVHSVSHIYNCEKEGVKLITLLFVVEKEDQRSMAREKIQIKKIDNATARQVTFSKRRRGLFKKAEELSVLCDADVALIVFSSTGKLFHYSSSSMREILERHHLHSKNLAKLDQPSLELQLAENSNYTRLSKEVAEKSHKLRQLRGEDLQGLNIEELQQLERSLETGLGRVIEKKGEKIMSEITELQRKGMQLVEENERLRRQVVEITNGKGHNHFGGESEILVGEEGQSSESVTNVCNNTTINNNNGPSQDYDSSEISLKLGLSYSG 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90651g00016 268 ProSiteProfiles MADS-box domain profile. 34 94 IPR002100 GO:0003677|GO:0046983
Stsc90651g00016 268 FunFam Transcription factor, MADS-box 46 116 - -
Stsc90651g00016 268 SMART madsneu2 34 93 IPR002100 GO:0003677|GO:0046983
Stsc90651g00016 268 ProSiteProfiles K-box domain profile. 120 210 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc90651g00016 268 PRINTS MADS domain signature 56 71 IPR002100 GO:0003677|GO:0046983
Stsc90651g00016 268 PRINTS MADS domain signature 71 92 IPR002100 GO:0003677|GO:0046983
Stsc90651g00016 268 PRINTS MADS domain signature 36 56 IPR002100 GO:0003677|GO:0046983
Stsc90651g00016 268 CDD MADS_MEF2_like 35 110 IPR033896 GO:0000977|GO:0045944
Stsc90651g00016 268 PANTHER SERUM RESPONSE FACTOR HOMOLOG 36 219 - -
Stsc90651g00016 268 Coils Coil 183 203 - -
Stsc90651g00016 268 SUPERFAMILY SRF-like 36 114 IPR036879 GO:0003677|GO:0046983
Stsc90651g00016 268 ProSitePatterns MADS-box domain signature. 36 90 IPR002100 GO:0003677|GO:0046983
Stsc90651g00016 268 Gene3D - 46 116 IPR036879 GO:0003677|GO:0046983
Stsc90651g00016 268 Coils Coil 127 147 - -
Stsc90651g00016 268 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 43 90 IPR002100 GO:0003677|GO:0046983
Stsc90651g00016 268 Pfam K-box region 124 204 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90651g00016 Stsc-Chr90651 111297 123408 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90651g00016 34 268 MADS-box Gene Family AT2G22540 68.293 1.78e-112 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Stsc90651g00016 K-box 1.2e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90651g00016 - - qsu:112018313 351.673