Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90651g00015 ATGGCTCGGGAGAAGATTCAGATAAAGAAGATAGACAACGCGACGGCAAGGCAGGTGACATTCTCGAAGAGAAGGAGAGGGCTGTTCAAGAAAGCGGAGGAGCTGTCGGTTCTGTGCGATGCGGATGTTGCCCTCATCGTCTTCTCTTCCACCGGCAAGCTCTTTCACTACTCCAGCTCAAGTATGAGGGAAATACTTGAAAGGCATCATTTGCACTCAAAGAACCTGGCAAAGCTGGATCAACCCTCTCTTGAATTGCAGTTAGCTGAAAACAGTAACTACACCAGACTTAGCAAGGAAGTTGCTGAGAAGAGCCATAAACTAAGGCAGCTGAGAGGAGAGGATCTTCAAGGCTTAAATATTGAAGAATTACAACAATTGGAGAGGTCTCTTGAAACTGGATTAGGCCGCGTAATAGAAAAGAAGGGAGAGAAGATTATGAGTGAGATCACTGAACTCCAAAGAAAGGGAATGCAATTGGTGGAAGAGAACGAGCGACTAAGGCGTCAAGTGGTGGAGATTACTAATGGGAAAGGGCATAATCATTTTGGTGGTGAATCTGAGATCTTAGTTGGGGAGGAAGGCCAGTCTTCAGAGTCTGTTACAAACGTTTGCAACAACACCACCATCAACAATAATAATGGACCTTCACAGGACTATGATAGTTCAGAAATTTCACTCAAGTTGGGGCTATCATATTCTGGCTAA 708 0.4477 MAREKIQIKKIDNATARQVTFSKRRRGLFKKAEELSVLCDADVALIVFSSTGKLFHYSSSSMREILERHHLHSKNLAKLDQPSLELQLAENSNYTRLSKEVAEKSHKLRQLRGEDLQGLNIEELQQLERSLETGLGRVIEKKGEKIMSEITELQRKGMQLVEENERLRRQVVEITNGKGHNHFGGESEILVGEEGQSSESVTNVCNNTTINNNNGPSQDYDSSEISLKLGLSYSG 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90651g00015 235 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Stsc90651g00015 235 Pfam K-box region 91 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc90651g00015 235 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Stsc90651g00015 235 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 187 - -
Stsc90651g00015 235 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Stsc90651g00015 235 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Stsc90651g00015 235 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Stsc90651g00015 235 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Stsc90651g00015 235 SUPERFAMILY SRF-like 3 81 IPR036879 GO:0003677|GO:0046983
Stsc90651g00015 235 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc90651g00015 235 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Stsc90651g00015 235 Coils Coil 94 114 - -
Stsc90651g00015 235 FunFam Transcription factor, MADS-box 13 83 - -
Stsc90651g00015 235 Coils Coil 150 170 - -
Stsc90651g00015 235 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Stsc90651g00015 235 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90651g00015 Stsc-Chr90651 111297 123408 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90651g00015 1 235 MADS-box Gene Family AT2G22540 68.293 6.74e-113 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Stsc90651g00015 K-box 7.5e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90651g00015 - - gmx:100789126 351.673