Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90651g00008 ATGGCCCTTCAGGGTTCTCTGCAGCTGACCCATGGACTGGGACTTTGCAGGAAACCAGGCCGCAATAAACATCCGTCGGTTGTGGGAAGAAGCAAGCTACATGTACTGAATACAGGTCCATCATATCCTCTTTCGTTCATGAAACTGGATAGCTGGGGTCTTCGACACTTCCATCACATAAACAGGCCAATACATAGATTATCTTACAAGTCTAGCCCATTTACATGTCATTCTCTTCTAGTGCCAAGCCAACCAAGTGAGCTACCTGTTGTTAAGGTGGCTGCTACCCTTCTGGCAAGGTCTATTAATCAGATACAAAGTAACCCTGTAATATTAAAGTTGATTCCTTCAGTTGCCATTATCATTTTTGCAACATGGGGTGTTGGCCCATTAGCGTGTCAGACAAGGAAATTGCTTTTCCAGAGGAGTGATAATAGTTGGAAGAAAAGTAGAACGCATTATATAGTAACTTCTTACCTTCGGCCATTACTTTTATGGACTGGAGCGATACTCTTTTGCAGAGCATTGGAACCAGTAATTCTACCTACAGAAACTAGCCAGGTTATTAAGGAACGGCTTCTGCATTTTGTTAGATCATTGTCAACCGTTCTGGCCTTTGCATATTGTTTATCAAGTGTGATTCAGCAAATACAGAAATTCTTCGCTGAAAGCACTGATCCAAGTGAGACGAGAACTATGGGATTCCAATTCGCAGGAAAAGCTGTCTATTCAGCAGTATGGATTGCAGCCTTTTCACTGTTCATGGAATTGCTAGGGTTCTCCACGCAGAGATGGGTTACTGCTGGAGGTCTTGGGACAGTTTTGTTGACTCTTGCCGGTCGTGAGATATTTACAAATTTCCTTTCAAGTGCGATGATCCATGCAACTCGTCCTTTTGTGATTAATGAGTGGATTCAAACAAAGATTGAAGGATATGAGGTTTCTGGTACCGTTGAGCATGTTGGTTGGTGGTCACCTACTATTGTAAGAGGTGAAGATGGTGAAGCTGTGCACATTCCAAACCACAAATTTACAGTAAATGTTGTGCGAAACCTTACTCAGAAAACACATTGGCGAATCAAAACCCATTTAGCCATTAGTCATTTGGATGTAAAAAAGATTAATAATATTGTTGCTGATATGCGAAAAGTACTAGCGAAAAACCCTCAAGTTGAGCAGCAGAGGTTGCATAGGAGGGTGTTCCTTGATAATATAAATCCTGAAAATCAGGCCCTTCTGATATTGGTGTCATGTTTCGTCAAGACTTCACATTTTGAAGAATATTTATGTGTTAAGGAAGCTATACTGTTGGATCTTCTTAGGGTTATTGGTCATCACAGAGCCCGTCTTGCAACACCAGTTCGCACCCTGCAGAAAATATACAGTGATGCTGACTTGGACAACATACCATACTCAGATTCCACTGGTGCCGGAACTGTATCTAACCGTCCATTATTAATGATTGAATCACCTAGCAAGATCAGTACGGATGATAAAGCAAAAGTCAGATCAGTACGATCAGCTGGAGATCAAGATAACAAGACAATCGCGCCAACCAGACTTGAATCCAAGGTTGGTTCGACAGGAATACAAGATGACTCCGAGGTGGATGCCAAAGTCACTACACCTAGTGCTAATGCAAACGGAAATGCCAAAACTGTGTCGACGCCCAAGCCTGACCCTGAAATGGTTGAGAACAAGCCACTAAAACCAGATTCCAAGGGTCAGACTGTTAAAAACACCAAGCCTAACATTGAATCCGAGAGCGTAGTTTCCTCCTCGGGAACAGGCAACACCGACAAAACCAGTGGTGTTCCTACGAATACACCAACAAAGCAGCAAGGAGAAAGGAAACCAGCTACACAACAACCCCCTCCTCCACTTTCTCCAGCATCAAGGCCTGTCCTTGAAGAGAATATAGTACTTGGTGTTGCATTGGAGGGATCAAAGAGGACCCTTCCTATTGAGGAGGGTATCGAGAATTCTGCAACTAGAGAGGCAAAGGAAATGGCTGCTTCCCATGGCGGAAATGGATCTCCAAAGGGCGGCGATGGAAATGAAAAGTAA 2067 0.4335 MALQGSLQLTHGLGLCRKPGRNKHPSVVGRSKLHVLNTGPSYPLSFMKLDSWGLRHFHHINRPIHRLSYKSSPFTCHSLLVPSQPSELPVVKVAATLLARSINQIQSNPVILKLIPSVAIIIFATWGVGPLACQTRKLLFQRSDNSWKKSRTHYIVTSYLRPLLLWTGAILFCRALEPVILPTETSQVIKERLLHFVRSLSTVLAFAYCLSSVIQQIQKFFAESTDPSETRTMGFQFAGKAVYSAVWIAAFSLFMELLGFSTQRWVTAGGLGTVLLTLAGREIFTNFLSSAMIHATRPFVINEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDGEAVHIPNHKFTVNVVRNLTQKTHWRIKTHLAISHLDVKKINNIVADMRKVLAKNPQVEQQRLHRRVFLDNINPENQALLILVSCFVKTSHFEEYLCVKEAILLDLLRVIGHHRARLATPVRTLQKIYSDADLDNIPYSDSTGAGTVSNRPLLMIESPSKISTDDKAKVRSVRSAGDQDNKTIAPTRLESKVGSTGIQDDSEVDAKVTTPSANANGNAKTVSTPKPDPEMVENKPLKPDSKGQTVKNTKPNIESESVVSSSGTGNTDKTSGVPTNTPTKQQGERKPATQQPPPPLSPASRPVLEENIVLGVALEGSKRTLPIEEGIENSATREAKEMAASHGGNGSPKGGDGNEK 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90651g00008 688 MobiDBLite consensus disorder prediction 494 508 - -
Stsc90651g00008 688 Gene3D - 194 297 - -
Stsc90651g00008 688 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 1 674 IPR045042 -
Stsc90651g00008 688 MobiDBLite consensus disorder prediction 652 688 - -
Stsc90651g00008 688 Gene3D - 298 351 IPR023408 -
Stsc90651g00008 688 MobiDBLite consensus disorder prediction 509 555 - -
Stsc90651g00008 688 SUPERFAMILY Sm-like ribonucleoproteins 283 353 IPR010920 -
Stsc90651g00008 688 Pfam Mechanosensitive ion channel 240 446 IPR006685 GO:0016020|GO:0055085
Stsc90651g00008 688 MobiDBLite consensus disorder prediction 573 619 - -
Stsc90651g00008 688 MobiDBLite consensus disorder prediction 490 636 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90651g00008 Stsc-Chr90651 57118 62638 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90651g00008 9 688 Mechanosensitive Ion Channel Family AT5G10490 55.350 0.0 720
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90651g00008 K22047 - gmx:100789444 1008.82