Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90650g00013 ATGGAGGACGATGAGCTGCTGCTGCTGTTGTTCCATGGTGGCCGCCGGCAGAGGAAAAGGTCCGTGCTGCTTCCTCCTCTGTTAATGGTGCTACTGCTGTTCGTGTTTTCTCCGGTTGTTCACCCTCTCACTGAAGAAGGTCAAGCATTGATGTCGATCAAGGCTTCCTTCATTAATATGGCAGATGTTTTGCATGACTGGGACGATGTCCACAATGACTATTTCTGCTCGTGGCGTGGCGTCCTCTGTGACAATTCTAGCTTCACTGTGATCTCTCTGAACTTGTCATACTTATTGCTGGGAGGGGAAATATCACCAGCCATTGGTGATTTAAGAAACTTGAAATCCATAGATCTGAGGGGGAATAAATTATCCGGTCAAATACCAGATGAAATTGGCAACTGTGCTGATCTTACTTATCTGGATTTGTCTGACAATCAGCTATATGGTGATATACCTTTCTCCATATCAAAGCTGAAACAACTTGAGTTTTTGAGTTTGAAGATGAATCAGTTGACTGGTCCCATCCCCACAACATTATCCCAAATCCCAAACCTGAAAACCCTCGATCTTGCACAAAACAAGCTCATTGGAGAGATACCTAGACTACTCTATTGGAATGAAGTTTTGCAGTACCTTGGATTGCGAGGGAACATGTTGACTGGAACTTTGTCTCCTGATATCTGTCAATTAACTGGTTTGTGGTACTTTGATGTAAGAGGCAATAACTTGACTGGCACTATACCTGAGAGCATTGGGAACTGTACAAGTTTTGAAATCTTGGACATCTCATATAATCAGATTTCTGGAGAGATTCCCTATAATATTGGATTTCTTCAAGTTGCTACATTGTCACTCCAAGGAAATAGACTAACTGGGAAGATTCCAGATGTAATTGGCTTAATGCAAGCCCTTGCAATTCTGGATTTGAGTGATAATGAGTTAGTAGGTCCTATACCACCAATACTGGGCAATTTGTCCTTCACCGGCAAGCTGTACCTTAATGGAAACAAGCTTACTGGTCCAATACCTGCAGAACTTGGAAACATGTCAAAATTGAGCTACCTGAATCTTGCCAATAACCATCTTGAAGGGTCTATTCCACATACCATAAGCTCCTGTACCGCATTGAATCATTTTAATGTTCATGGAAATCAATTAAGCGGTTCCATCCCACTTAGCTTCCGCAGCCTTGAGCGTTTGACCTACCTCAATCTCTCTGCTAACAATTTCAAAGGGAGTATCCCTACTGATTTGGGCCACACCATAAATCTTGATACATTGGATCTTTCTAGCAATCATTTTACTGGGCATGTACCTGCATCTGTTGGCTATTTGGAACACCTTTTGAAACTGAACCTGAGTCATAATCAGTTTGATGGTCCCTTGCCTCCAGAATTTGGGAATCTAAGAAGCATACAAATCATTGATATGTCCTTCAACAATCTGTCGGGTACCATTCCTCCAGAGTTTGGCCTACTGCAGAACCTTATGTCCCTGATTCTGAACAACAACCATTTGGATGGGAAGATTCCTGATCAGCTTAGTAATTGTTTCAGTCTTAACTCTTTGAACTTCTCCTATAATAACTTTTCTGGAGTCATTCCTTCTATGAAGAACTTTTCTCGGTTTTCAGCTGAAAGCTTCATTGGAAATCCTTTACTATGTGGTGATTGGCTAGGATCTATTTGTCGTCCTCACATTCCAAAATCCAGAGTGTTTGTCTCAAGAATTGCAGTTATATGTCTTGCTCTGGGTGTGATCACATTATTGGCTATGGTAACAGTTGCTATCCATAAATCAAACCAATCGAAGCAATTGGTGAAAGTTTCTGGCAGAATTGGCCAAGGGCCACCTAAACTTGTAATTCTTCATATGGATATGGCTATCCACACCTTAGATGATATAATGAGAAGTACGGAGAATCTCAATGAGAAATATGCTATAGGGTATGGTGCTTCTAGTACTGTGTACAAATGTCCTTTGAAGAACTCCCGGGCAATTGCGGTTAAGCGATTGTACAACCAGTATCCACATAACCTGCAGGAGTTTGAGACAGAACTTGAAACAATTGGCAGCATTAGGCACAGGAATCTTGTCACGTTGCATGGTTATGCACTAACACCCTATGGGAATCTCCTGTTCTATGATTATATGGCCAATGGTCCGCTGAAGGTGAAACTTGACTGGGAGACACGCTTGAGAATTGCAGTTGGAGCTGCTGAAGGACTTGCCTATCTCCATCATGACTGCAACCCTCGAATTGTTCACAGGGACATCAAGTCTTCAAACATCCTTCTTGATGAGAATTTTGAGGCACACCTTTCTGACTTTGGAACTGCCAAATCCATCTCAAGTGCAAGAACACACACTTCAACTTATGTTCTTGGAACAATAGGCTATATTGACCCTGAATATGCCCGGACTTCAAGGCTTAACGAAAAATCCGATGTTTATAGCTTCGGCATTGTTCTACTAGAGTTACTTACAGGAAAGAAAGCTGTGGATAACGATTCTAACTTGCATCAACTGATCTTGTCCAAGGCAGATAACAACACTGTAATGGAGGCTGTGGATCCTGAGGTTTCAGTTACCTGCATTGACTTGGCCCATGTGAAGAAGACCTTTCAGCTTGCGCTGCTTTGCACAAAACGAAACCCTTCCGAGAGGCCTACTATGCATGAGGTTGCCAGGGTTCTGGTCTCACTATTCCCAGCACCTCCAAGCAAGATCAGCTCCGGCCCTGCTAAGAATGCGGACTATGCACATTTTTTGATTGGGAAGGGACAACAGCAACCAAAAGTTGAAGGGCTTCAACCCCAGCAGGAAAACAATTCATCAAATGCTCAATGGTTTGTGCGCTTTGGGGATGCTATTTCTAAGAACACTCTCTAG 2895 0.4263 MEDDELLLLLFHGGRRQRKRSVLLPPLLMVLLLFVFSPVVHPLTEEGQALMSIKASFINMADVLHDWDDVHNDYFCSWRGVLCDNSSFTVISLNLSYLLLGGEISPAIGDLRNLKSIDLRGNKLSGQIPDEIGNCADLTYLDLSDNQLYGDIPFSISKLKQLEFLSLKMNQLTGPIPTTLSQIPNLKTLDLAQNKLIGEIPRLLYWNEVLQYLGLRGNMLTGTLSPDICQLTGLWYFDVRGNNLTGTIPESIGNCTSFEILDISYNQISGEIPYNIGFLQVATLSLQGNRLTGKIPDVIGLMQALAILDLSDNELVGPIPPILGNLSFTGKLYLNGNKLTGPIPAELGNMSKLSYLNLANNHLEGSIPHTISSCTALNHFNVHGNQLSGSIPLSFRSLERLTYLNLSANNFKGSIPTDLGHTINLDTLDLSSNHFTGHVPASVGYLEHLLKLNLSHNQFDGPLPPEFGNLRSIQIIDMSFNNLSGTIPPEFGLLQNLMSLILNNNHLDGKIPDQLSNCFSLNSLNFSYNNFSGVIPSMKNFSRFSAESFIGNPLLCGDWLGSICRPHIPKSRVFVSRIAVICLALGVITLLAMVTVAIHKSNQSKQLVKVSGRIGQGPPKLVILHMDMAIHTLDDIMRSTENLNEKYAIGYGASSTVYKCPLKNSRAIAVKRLYNQYPHNLQEFETELETIGSIRHRNLVTLHGYALTPYGNLLFYDYMANGPLKVKLDWETRLRIAVGAAEGLAYLHHDCNPRIVHRDIKSSNILLDENFEAHLSDFGTAKSISSARTHTSTYVLGTIGYIDPEYARTSRLNEKSDVYSFGIVLLELLTGKKAVDNDSNLHQLILSKADNNTVMEAVDPEVSVTCIDLAHVKKTFQLALLCTKRNPSERPTMHEVARVLVSLFPAPPSKISSGPAKNADYAHFLIGKGQQQPKVEGLQPQQENNSSNAQWFVRFGDAISKNTL 964
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90650g00013 964 PANTHER LEUCINE RICH REPEAT KINASE 2 157 905 - -
Stsc90650g00013 964 Gene3D Phosphorylase Kinase; domain 1 616 716 - -
Stsc90650g00013 964 ProSitePatterns Protein kinases ATP-binding region signature. 649 671 IPR017441 GO:0005524
Stsc90650g00013 964 Gene3D Ribonuclease Inhibitor 281 567 IPR032675 -
Stsc90650g00013 964 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 614 718 - -
Stsc90650g00013 964 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 43 207 - -
Stsc90650g00013 964 Pfam Leucine rich repeat 424 483 IPR001611 GO:0005515
Stsc90650g00013 964 Pfam Leucine rich repeat 352 411 IPR001611 GO:0005515
Stsc90650g00013 964 Gene3D Ribonuclease Inhibitor 43 208 IPR032675 -
Stsc90650g00013 964 Gene3D Transferase(Phosphotransferase) domain 1 717 907 - -
Stsc90650g00013 964 SUPERFAMILY Protein kinase-like (PK-like) 623 900 IPR011009 -
Stsc90650g00013 964 Pfam Leucine rich repeat N-terminal domain 45 84 IPR013210 -
Stsc90650g00013 964 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 440 564 - -
Stsc90650g00013 964 ProSitePatterns Serine/Threonine protein kinases active-site signature. 755 767 IPR008271 GO:0004672|GO:0006468
Stsc90650g00013 964 ProSiteProfiles Leucine-rich repeat profile. 185 207 IPR001611 GO:0005515
Stsc90650g00013 964 ProSiteProfiles Protein kinase domain profile. 643 904 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90650g00013 964 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 208 317 - -
Stsc90650g00013 964 Gene3D Ribonuclease Inhibitor 209 280 IPR032675 -
Stsc90650g00013 964 SUPERFAMILY L domain-like 45 327 - -
Stsc90650g00013 964 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 344 439 - -
Stsc90650g00013 964 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 710 910 - -
Stsc90650g00013 964 Pfam Leucine Rich repeat 254 271 IPR001611 GO:0005515
Stsc90650g00013 964 Pfam Protein kinase domain 645 897 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90650g00013 964 SMART LRR_typ_2 183 207 IPR003591 -
Stsc90650g00013 964 SMART LRR_typ_2 231 255 IPR003591 -
Stsc90650g00013 964 SMART LRR_typ_2 494 518 IPR003591 -
Stsc90650g00013 964 SMART LRR_typ_2 350 374 IPR003591 -
Stsc90650g00013 964 SMART LRR_typ_2 470 493 IPR003591 -
Stsc90650g00013 964 SMART LRR_typ_2 398 422 IPR003591 -
Stsc90650g00013 964 SMART LRR_typ_2 111 135 IPR003591 -
Stsc90650g00013 964 SMART LRR_typ_2 446 469 IPR003591 -
Stsc90650g00013 964 SMART serkin_6 643 904 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90650g00013 964 SUPERFAMILY L domain-like 282 557 - -
Stsc90650g00013 964 Pfam Leucine Rich Repeat 113 135 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90650g00013 Stsc-Chr90650 109562 116301 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90650g00013 27 964 Receptor kinase-like Gene Family AT5G62230 71.489 0.0 1322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIb Stsc90650g00013 Pkinase 7.7e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90650g00013 K20718 - gmx:100811653 1548.87