Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90650g00005 ATGGAACAGCAAGACCAACACAACAACAATAAGGAAGACGAGGAGGAGGAGAAGGATGCCAATGCAGTTTGGAGGTTTAGGATTTCGGAGCCATTGAGGGAGAGGCTCAAGGGGAAGGGGATAGAGTCTCTCTTTCCAATTCAGGCCATCACTTTTGATACCATTCTTGATGGCTCTGATCTGGTTGGCCGCGCTCGAACCGGTCAGGGCAAAACGCTGGCGTTTGTCTTGCCCATATTAGAGTCTTTGACAAACGGTATGGCTAAAGCATCCCGAAAGACTGGCTATAGGAGGCCTCCAAGCGTTCTTGTTCTTTTGCCCACCAGGGAATTGGCCTCTCAGGTTCACTCTGATTTCGAATTTTATGGTGCCGCCGTCGGATTAACATCCTGCTGTTTATATGGTGGAGCTCCTTATCAGAGCCAAGAAATTAAGCTCAAGAGAGGTGTTGATATTGTTGTTGGCACACCTGGCCGCATTAAGGATCATATAGAGAGGGAAAATATTGACCTAAGCCAACTTAAGTTTCGTGTCCTGGATGAAGCAGATGAGATGCTGAGGATGGGTTTTGTTGAAGATGTTGAACTTATTCTGGGTAAGGTAGAGAACATTAGTAAAGTCCAGACACTTCTATTCAGTGCTACTTTGCCAGACTGGGTTAAGCATATTGCTGCAAAATTTCTGAAGCCAGATAAGAAGACAGCTGACCTTGTAGGAAATACAAAAATGAAGGCAAGCACCAATGTTAGGCATATTGTTCTTCCCTGCACTACTTCTGCCAGATCTCGCCTTATTCCGGACATCATCCGTTGTTATAGCAGTGGAGGACGGACAATTATATTTACCGAAACAAAGGAGTCTGCTTCACAACTTGCAGGTTTCTTGCCTGGAGCAAGAGCTCTCCATGGCGACATACAGCAAGCGCAACGTGAGGTTACATTGTCCGGCTTCAGGTCTGGAAAATTCATGATATTAGTTGCTACAAATGTGGCAGCTCGAGGTCTGGATATCAATGATGTCCAATTAATTATCCAGTGTGAACCCCCACGGGATGTAGAAGCCTATATCCATCGTTCTGGGCGCACGGGAAGAGCAGGTAATAGTGGAGTTGCTGTCATGCTTTATGATCCAAGGAGGTCAAGTATATCTAAAATCGAAAGAGAATCCGGTGTAAAATTCGAACATATATCTGCTCCTCAGCCTCATGATATTGCTAAAGCCATAGGTAGGGAAGCTGCTGAGATGATCAATCAAGTGTCTGATAGTGTGATTCCTGCATTCAAGTCTACTGCTGAGGAGCTTTTGAAAAATTCCGGTTTGTCAGTTGTTGAATTGCTTGCAAAGGCTCTTGCCAAGGCTGTTGGTTATACTGAGATGAAGAAAAGATCTCTTCTCACTTCTATGGAGAACTACGTTACATTACTTCTTGAGATTGGGAAACCTATCTTCACTCCAACTTTTGCTTATGGAGTGTTGAGGAGATTCTTGCCCGAAGAGAAGGTCGAGGCAGTGAAGGGTCTCACTCTCACTGCTGATGGAAGTGGCTTTGTCTTTGATTTACCAGCTGAAGATTTAGATACATATCTTGCAGGTAAGGAAAAGGCCTCAAATGTGAGGTTAGAGGTGTTGACTGCATTGCCACGTTTGCAAGAAAAAGACCAGTCAAGAGGTGGCAGATTTGGGGGTAGTGGTGGTGGAGGTGGCCGTCGTGGTGGTTTTGGCGATAGAAATGTGGGGAGTAGGTTTTCAGGTGGAAGAGGTGGTAGTGGAAGAAATGTTAGAGTTTCCGGTGATAGATTCTTTAATAACGGTGGTGGTGGGAGAGGTCGTGGCAACAGGAGTGGAAAGAGATGGTGA 1857 0.454 MEQQDQHNNNKEDEEEEKDANAVWRFRISEPLRERLKGKGIESLFPIQAITFDTILDGSDLVGRARTGQGKTLAFVLPILESLTNGMAKASRKTGYRRPPSVLVLLPTRELASQVHSDFEFYGAAVGLTSCCLYGGAPYQSQEIKLKRGVDIVVGTPGRIKDHIERENIDLSQLKFRVLDEADEMLRMGFVEDVELILGKVENISKVQTLLFSATLPDWVKHIAAKFLKPDKKTADLVGNTKMKASTNVRHIVLPCTTSARSRLIPDIIRCYSSGGRTIIFTETKESASQLAGFLPGARALHGDIQQAQREVTLSGFRSGKFMILVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNSGVAVMLYDPRRSSISKIERESGVKFEHISAPQPHDIAKAIGREAAEMINQVSDSVIPAFKSTAEELLKNSGLSVVELLAKALAKAVGYTEMKKRSLLTSMENYVTLLLEIGKPIFTPTFAYGVLRRFLPEEKVEAVKGLTLTADGSGFVFDLPAEDLDTYLAGKEKASNVRLEVLTALPRLQEKDQSRGGRFGGSGGGGGRRGGFGDRNVGSRFSGGRGGSGRNVRVSGDRFFNNGGGGRGRGNRSGKRW 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90650g00005 618 Gene3D - 1 235 IPR027417 -
Stsc90650g00005 618 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 10 423 - -
Stsc90650g00005 618 SMART helicmild6 289 366 IPR001650 -
Stsc90650g00005 618 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 99 378 IPR027417 -
Stsc90650g00005 618 CDD SF2_C_DEAD 249 375 - -
Stsc90650g00005 618 SMART ultradead3 40 252 IPR014001 -
Stsc90650g00005 618 SUPERFAMILY RNA-binding domain, RBD 459 542 IPR035979 GO:0003676
Stsc90650g00005 618 Gene3D - 248 473 IPR027417 -
Stsc90650g00005 618 FunFam DEAD-box ATP-dependent RNA helicase 7 472 544 - -
Stsc90650g00005 618 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 264 405 IPR001650 -
Stsc90650g00005 618 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 52 234 IPR014001 -
Stsc90650g00005 618 CDD DEADc 32 229 - -
Stsc90650g00005 618 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 178 186 IPR000629 -
Stsc90650g00005 618 MobiDBLite consensus disorder prediction 553 618 - -
Stsc90650g00005 618 Pfam DEAD/DEAH box helicase 45 222 IPR011545 GO:0003676|GO:0005524
Stsc90650g00005 618 Gene3D - 474 545 - -
Stsc90650g00005 618 Pfam GUCT (NUC152) domain 455 550 IPR012562 GO:0003723|GO:0004386|GO:0005524
Stsc90650g00005 618 Pfam Helicase conserved C-terminal domain 269 366 IPR001650 -
Stsc90650g00005 618 CDD GUCT_RH7_like 462 547 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90650g00005 Stsc-Chr90650 18191 21217 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90650g00005 1 372 Eukaryotic Initiation Factors Gene Family AT3G13920 30.053 2.55e-41 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90650g00005 K16911 - jre:108988915 899.427