Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90649g00018 ATGGGTGTTGGGAACCGAGGGAACGCTCGAAATGTGGAGCTTCCTAGTTTGTCTCTCCATAATCTTCTACGTGGGAGAAAGATTTTAGTGGTAGATGACAACAATGTTAACCGCACTGTTGCTGCCGGTGCCTTAAAAAAATATGGAGCTGATGTGGTTTGTGTAAGCAGTGGAAAAGATGCCATCGCCAAGCTGAAGCCGCCTCATCAATTCGATGCCTGTTTTATGGATATCCAAATGCCAGAAATGGATGGCTTTGAAGCTACAAGGCGAATTCGAGATCTTGAGCGGATTGTGAGTCGAGAAGCATCAACGGAGGCTACTGATGATAATAATTCAAACTTTCATCTTCCGATTTTGGCTATGACTGCAGATGTAATCCAGGCAACTAATGAGGAATGTCTAAAATGTGGGATGGATGGATACGTTTCAAAACCATTTGAAGCTGAACAACTATATAGAGAAGTTTCGTGA 474 0.4304 MGVGNRGNARNVELPSLSLHNLLRGRKILVVDDNNVNRTVAAGALKKYGADVVCVSSGKDAIAKLKPPHQFDACFMDIQMPEMDGFEATRRIRDLERIVSREASTEATDDNNSNFHLPILAMTADVIQATNEECLKCGMDGYVSKPFEAEQLYREVS 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90649g00018 157 CDD REC_hyHK_CKI1_RcsC-like 28 156 - -
Stsc90649g00018 157 SUPERFAMILY CheY-like 23 156 IPR011006 -
Stsc90649g00018 157 PANTHER TWO-COMPONENT HISTIDINE KINASE 25 153 - -
Stsc90649g00018 157 Gene3D - 10 157 - -
Stsc90649g00018 157 ProSiteProfiles Response regulatory domain profile. 27 157 IPR001789 GO:0000160
Stsc90649g00018 157 Pfam Response regulator receiver domain 28 155 IPR001789 GO:0000160
Stsc90649g00018 157 SMART REC_2 26 156 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90649g00018 Stsc-Chr90649 144273 144909 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90649g00018 1 157 Miscellaneous Gene Families AT1G27320 70.988 2.04e-72 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Stsc90649g00018 Response_reg 1.2e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90649g00018 K14489 - gmx:100776798 243.047