Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90649g00013 ATGCTAGAGATTAAACCATATCAGAAGGTAATTGTTATAGACCTACATATTTCATTCCATTTTGGGTGGTTTCCTTATGTTGCATTTGTACTGAGGGTTTTCCCTATTCTCTTTCGGGCCGAGTTCACCTCTGTTGAAGTTTCCAAAAGGCAGTTGCAAAATTCCAAGAAGCCTAATTATGTTGATGCTACCAAGTTGACCCAGAAGAATCTCAACCCTTGCTGGTCTTACTACAAATATGTGAGGGACGGGGAGATAAGCGTCTACCACATGGTCCAGTGGTATAGGGTTGTGCTAGATGAAGCTCATACTATTAAAGCCCATAAAGGCCAGGGTGCCATGGCTGCATTTGCTTTGACCTCAAACTGTAGCAAGTGTCTAACTGGAACCCCTCTTCAGGTGTTTCTTGAAGAATATGTTAACAAAGTAAATATCATAATAGTTTAA 447 0.4072 MLEIKPYQKVIVIDLHISFHFGWFPYVAFVLRVFPILFRAEFTSVEVSKRQLQNSKKPNYVDATKLTQKNLNPCWSYYKYVRDGEISVYHMVQWYRVVLDEAHTIKAHKGQGAMAAFALTSNCSKCLTGTPLQVFLEEYVNKVNIIIV 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90649g00013 148 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 84 134 - -
Stsc90649g00013 148 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 86 144 IPR027417 -
Stsc90649g00013 148 Pfam SNF2-related domain 87 143 IPR000330 GO:0005524|GO:0140658
Stsc90649g00013 148 Gene3D - 31 148 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90649g00013 Stsc-Chr90649 91464 92815 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90649g00013 80 138 RAD5 or RAD16-like Gene Family AT5G43530 57.627 1.44e-17 76.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Stsc90649g00013 SNF2_N 1.5e-10 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90649g00013 K15505 - twl:120012075 89.3521