Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90649g00007 ATGGAAACTAACCTCAACAACACCATTTGCACATTCACAGATATTGATATCACAAATTGGAACAACAATAATCATCCTCATCATCATCATGATTATGATGAAAACAAGAAGATAGAAACAACACAAGAAGAAGGAGAAGATCACCAAATTATTCCTAACATGTGCTGCTGGCCCAACCTCCTTCAACAACAGCAACAAATACCACCAATACCCTCAACATCTAGAACCTTCCTCAGTGATGACATACTAGTAGGGATCAACTTGCAGAAGGAAGACAAAGACGACGAAGACAAAGAAGAAGAAGAAGAGTTAGGAGCGATGAAGGAGATGATGTACAAGATCGCGGCTATGCAACCGGTGGACATCGACCCCGCGAGCGTTCGAAAGCCGAAGAGGCGAAACGTGAGGATAAGTGAGGATCCTCAGAGCGTGGCGGCGCGTCACAGAAGGGAGAGGATCAGCGAGAGGATGAGAATCCTTCAGAGGCTGGTTCCAGGTGGCACCAAGATGGACACAGCTTCCATGCTGGACGAAGCCATTCGATATGTCAAGTTCTTGAAGCGCCAAATCAGGTTCCTCCAATCAAATCATCCAAATCAACCACCACCACCACCTAATTGGCCTTTTGCACCACCGAATAATAATAATATCATGCTTCACGCTCCTTCTTCTGCTGCTGCTGCAACTTCCATGCCGCCGCCGCTTCCTCCGCCGGGGCTTCCTGGATTTGGAACCCTAAGCAGCCATGGCCATCACTGCAAGCACCTTTATTGA 774 0.4729 METNLNNTICTFTDIDITNWNNNNHPHHHHDYDENKKIETTQEEGEDHQIIPNMCCWPNLLQQQQQIPPIPSTSRTFLSDDILVGINLQKEDKDDEDKEEEEELGAMKEMMYKIAAMQPVDIDPASVRKPKRRNVRISEDPQSVAARHRRERISERMRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRFLQSNHPNQPPPPPNWPFAPPNNNNIMLHAPSSAAAATSMPPPLPPPGLPGFGTLSSHGHHCKHLY 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90649g00007 257 CDD bHLH_AtIND_like 138 195 - -
Stsc90649g00007 257 Gene3D - 140 200 IPR036638 GO:0046983
Stsc90649g00007 257 Pfam Helix-loop-helix DNA-binding domain 147 186 IPR011598 GO:0046983
Stsc90649g00007 257 Coils Coil 176 196 - -
Stsc90649g00007 257 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 142 197 IPR036638 GO:0046983
Stsc90649g00007 257 SMART finulus 143 192 IPR011598 GO:0046983
Stsc90649g00007 257 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 23 222 IPR045843 GO:0003700|GO:0006355
Stsc90649g00007 257 MobiDBLite consensus disorder prediction 197 211 - -
Stsc90649g00007 257 MobiDBLite consensus disorder prediction 195 214 - -
Stsc90649g00007 257 FunFam BHLH transcription factor 140 202 - -
Stsc90649g00007 257 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 137 186 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90649g00007 Stsc-Chr90649 43245 44018 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90649g00007 104 204 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G09750 88.119 1.33e-48 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc90649g00007 HLH 4.6e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90649g00007 - - aip:107620984 262.307