Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90649g00005 ATGGTGTCCAACACTGCTAGAAAGATCATACGCTGCAAAGCTGCTGTGGCTTGGGAAGCTGGAAAGCCACTGGTGATAGAGGAAGTGGAGGTAGCTCCACCGCAGGCAAATGAGGTCCGCATCAAGATATTGTTCACCTCACTCTGCCACACTGATGTCTACTTCTGGGAAGCTAAGGGACAGACACCCGTGTTTCCTCGTATTCTTGGCCATGAAGCCGGCGGCATTGTTGAGAGTGTTGGTGAGGGCGTGACCGATCTCAAGCCCGGCGATCATGTTCTTCCGGTGTTCACAGGGGAGTGCAAGGAGTGTCAGCACTGCAAATCAGAGGAAAGTAACATGTGTGATCTCTTAAGGATCAACACTGACCGCGGAGTGATGATTGGCGATGGCAAATCAAGATTCTCAATCAAGGGAAAACCAATTTACCATTTTGTTGGAACCTCCACATTCAGTGAATACACTGTTGTTCATGTTGGCCAGGTTGCCAAGATTAACCCTGCTGCACCACTTGAAAAAGTTTGTGTCCTCAGTTGTGGAATCTCAACAGGTCTTGGTGCAACATTGAATGTTGCAAAACCAACCAAAGGTTCATCGGTGGCTATATTTGGATTGGGAGCTGTGGGGCTAGCTGCGGCCGAGGGTGCAAGACTAGCCGGTGCATCCAGGATCATTGGGGTTGACTTGAATTCCAAGAGATTTACCGAAGCTAAGAAGTTCGGAGTTACTGAGTTTGTGAATCCAAAAGATTATGACAAGCCTGTTCAAGAGGTGATCGCTGAATTGACTAACGGTGGTGTGGACCGGAGTGTTGAGTGTACTGGAAGTCTCGGTGCTATGATCTCCGCATTCGAATGCGTCCACGATGGATGGGGTGTTGCTGTGCTTGTTGGTGTGCCAAACAAAGATGATGCTTTCAAAACACATCCAATCAATCTCTTGAATGAGAAGACTCTAAAGGGTACTTTCTTTGGTAACTATAAGCCACGTTCTGATCTCCCATCAGTGGTGGAAATGTACATGAACAAGGAACTTGAACTGGAGAAGTTTATCACACATGAAGTGCCATTCTCAGAAATCAACAAGGCCTTTGAATACATGCTTACGGGAGAGAGCCTCCGTTGTATAATCCGCATGCCTGCATAA 1146 0.4738 MVSNTARKIIRCKAAVAWEAGKPLVIEEVEVAPPQANEVRIKILFTSLCHTDVYFWEAKGQTPVFPRILGHEAGGIVESVGEGVTDLKPGDHVLPVFTGECKECQHCKSEESNMCDLLRINTDRGVMIGDGKSRFSIKGKPIYHFVGTSTFSEYTVVHVGQVAKINPAAPLEKVCVLSCGISTGLGATLNVAKPTKGSSVAIFGLGAVGLAAAEGARLAGASRIIGVDLNSKRFTEAKKFGVTEFVNPKDYDKPVQEVIAELTNGGVDRSVECTGSLGAMISAFECVHDGWGVAVLVGVPNKDDAFKTHPINLLNEKTLKGTFFGNYKPRSDLPSVVEMYMNKELELEKFITHEVPFSEINKAFEYMLTGESLRCIIRMPA 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90649g00005 381 SUPERFAMILY GroES-like 5 187 IPR011032 -
Stsc90649g00005 381 FunFam alcohol dehydrogenase 1-like isoform X1 20 183 - -
Stsc90649g00005 381 CDD alcohol_DH_plants 10 378 - -
Stsc90649g00005 381 Pfam Alcohol dehydrogenase GroES-like domain 37 164 IPR013154 -
Stsc90649g00005 381 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 70 84 IPR002328 GO:0008270|GO:0016491
Stsc90649g00005 381 SMART PKS_ER_names_mod 21 373 IPR020843 GO:0016491
Stsc90649g00005 381 FunFam Alcohol dehydrogenase class-P 184 322 - -
Stsc90649g00005 381 PANTHER ALCOHOL DEHYDROGENASE 8 377 - -
Stsc90649g00005 381 Pfam Zinc-binding dehydrogenase 207 337 IPR013149 -
Stsc90649g00005 381 Gene3D - 184 322 - -
Stsc90649g00005 381 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 170 343 IPR036291 -
Stsc90649g00005 381 SUPERFAMILY GroES-like 329 378 IPR011032 -
Stsc90649g00005 381 Gene3D - 20 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90649g00005 Stsc-Chr90649 26096 28584 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90649g00005 37 365 Monolignol Biosynthesis Gene Families AT1G72680 25.749 6.99e-13 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90649g00005 K18857 - gmx:100783318 710.679