Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90648g00028 ATGGCACCATCTCTCACCGGCCATCATCTTCTTGAAGCATCCCAAATGAAACAAACAACACTAATATTGTTCTTTTCTCTTCTAACAAGAATCACTCTATGTTCTGTGAATCCAAAGTACGCAGCATGTGAACCCAAAACATGTGGTGGTGGTGGTAATAATCACCAAGAGATAAGTTTTCCCTTCTACATCGTATCAAAACAGAGCTCCTATTGTGGACTCCCTAATTTCGGTCTCACCTGCTCTAGCAACGGCTTCCCAATCCTCAACACCTCAGAAACACTATACACCGTCCAAAACATTTTCTACAACAACCAATCACTTCGAGTGTCCATCCCTGCGCTCTCAGAACCAAGAAACACGGAATGTATTCCCCAAGTGAGAAACATCAGCGGCAACAGCAAAAGGTTCAGCGTTGCTCCGAAGCAGAAGCAAGTGTTGCTGTTCTATGGCTGCAAGAACATGCCGAATCACAGTATTGGGTGGTGGTGTTCATCATCAACTGAAAACAACAGAAGAAGGAGATCGGTTGTGGCCATTTATGGGGATGATGTTGAGAATTTAAAGTTGGCTGAGGAGAATTATTGCAGCATTAATACGAGGGTGAGCGTGACAATGGTGGAAGATGAGAAAGGAGGGATTGAAGAGGGACTGAGAAGAGGGTTTTTGATGAAGTGGACGGCCAAAAATTGCAGTGAGTGCTCCATGAGTGGTGGGAGGTGTGGATTTGATGAAGAAAACTATGCTTTCAGATGCTATTGCCGTGATAGAATCGATTCAGAGAACTGTTATCCACAACCAGGATTGAGCAAGCGAGGGAAAGTTGGCATAGCATTAGGTGTCGTACTCTCAAGCATCTTGCTCGTTGGACTTCTCCTTTTATTCTACAAACGAAGACGTAGTTCCTCACGTGATCAATTCCAGACAAGAAACACTTCTGCTGAACACTCCCCAGATCCAGACGTAGAAAGTGGAAGCATGTACTTCGGAATTCCCCTTTTCTCCTACAAGGAGCTTGAAGAAGCAACAAGCCGCTTCGACCTTAATAAACAAATCGGAGATGGAGGATTTGGAACTGTCTACTATGGGAAACTCCATGATGGCCGCGAAGTTGCCGTGAAACGCTTGTACGAGCACAACTACAGACGAGTTGAGCAGTTCATGAACGAAGTGCAGATCCTCACGCGTTTGCGCCACAAGAATCTCGTGTCCCTCTATGGCTGCACTTCGCGCAAGAGCCGCGAACTACTGCTTGTATATGAGTATATTCCCAACGGAACCGTTGCTTCTCATCTTCATGGTGAATTAGCAAAGCCTGGCTTACTACCATGGTCTAAAAGAATCAAAATTGCTGTGGAGACTGCTAGTGCTTTAGCTTATCTCCATGCAACTGACATCATTCACCGCGACGTTAAAACCAACAATATTCTTCTTGATGACAGTTATTCTGTTAAAGTTGCAGATTTTGGCCTTTCAAGACTGTTCCCCAACGATGTTACCCATGTATCGACGGCGCCACAGGGAACTCCGGGTTATGTTGACCCGGAGTATTACCAATGCTATCAGCTTACAAGCAAGAGTGATGTGTATAGTTTTGGAGTTGTGCTTATGGAGTTGATATCGTCTAAGCCGGCTGTTGATATGAACAGAGACAAAGATGAGATTAATTTGTCAAGTCTAGCCATAAAGAAGATTCAAGAAAGTGCACTTGTTGAGATTGTTGACCCTTCACTTGGTTTTGATTCCGACAATGAGGTTAAGAGGACGGTTGTTTACGTGGCGGAATTGGCTTTTCAGTGTTTGCAACGGGACAAGGACTTGAGACCTTCAATGGATAAAGTGTTGGAGGTGCTCAAGAGAATTGAGAGTGGGAAGAAGGATGATGATGATGCAGAGCATTTAGAGGTAGTAGATGTTGATCATGGTGTTGGAGTTTCACCAAGTAATGTAAATTCAGCAGAATGGGACCAAATTGGGCTGGTGAAGAATGTGAAGCCACCTTCTTCGCCAGTAACTGTTACTGATAGCTGGGAAAGTAAATCCACTACGCCTAACGTTAGTGGTTAA 2067 0.4441 MAPSLTGHHLLEASQMKQTTLILFFSLLTRITLCSVNPKYAACEPKTCGGGGNNHQEISFPFYIVSKQSSYCGLPNFGLTCSSNGFPILNTSETLYTVQNIFYNNQSLRVSIPALSEPRNTECIPQVRNISGNSKRFSVAPKQKQVLLFYGCKNMPNHSIGWWCSSSTENNRRRRSVVAIYGDDVENLKLAEENYCSINTRVSVTMVEDEKGGIEEGLRRGFLMKWTAKNCSECSMSGGRCGFDEENYAFRCYCRDRIDSENCYPQPGLSKRGKVGIALGVVLSSILLVGLLLLFYKRRRSSSRDQFQTRNTSAEHSPDPDVESGSMYFGIPLFSYKELEEATSRFDLNKQIGDGGFGTVYYGKLHDGREVAVKRLYEHNYRRVEQFMNEVQILTRLRHKNLVSLYGCTSRKSRELLLVYEYIPNGTVASHLHGELAKPGLLPWSKRIKIAVETASALAYLHATDIIHRDVKTNNILLDDSYSVKVADFGLSRLFPNDVTHVSTAPQGTPGYVDPEYYQCYQLTSKSDVYSFGVVLMELISSKPAVDMNRDKDEINLSSLAIKKIQESALVEIVDPSLGFDSDNEVKRTVVYVAELAFQCLQRDKDLRPSMDKVLEVLKRIESGKKDDDDAEHLEVVDVDHGVGVSPSNVNSAEWDQIGLVKNVKPPSSPVTVTDSWESKSTTPNVSG 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90648g00028 688 ProSiteProfiles Protein kinase domain profile. 346 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90648g00028 688 SMART serkin_6 346 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90648g00028 688 ProSitePatterns Protein kinases ATP-binding region signature. 352 374 IPR017441 GO:0005524
Stsc90648g00028 688 MobiDBLite consensus disorder prediction 664 688 - -
Stsc90648g00028 688 Pfam Protein kinase domain 348 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90648g00028 688 Gene3D Phosphorylase Kinase; domain 1 319 422 - -
Stsc90648g00028 688 Gene3D Transferase(Phosphotransferase) domain 1 423 635 - -
Stsc90648g00028 688 ProSitePatterns Serine/Threonine protein kinases active-site signature. 466 478 IPR008271 GO:0004672|GO:0006468
Stsc90648g00028 688 MobiDBLite consensus disorder prediction 667 688 - -
Stsc90648g00028 688 CDD STKc_IRAK 352 621 - -
Stsc90648g00028 688 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 19 682 IPR044652 GO:0004672
Stsc90648g00028 688 FunFam Wall-associated receptor kinase-like 20 423 631 - -
Stsc90648g00028 688 SUPERFAMILY Protein kinase-like (PK-like) 323 618 IPR011009 -
Stsc90648g00028 688 FunFam WAK1-OsWAK receptor-like cytoplasmic kinase (OsWAK-RLCK) 319 422 - -
Stsc90648g00028 688 Pfam Wall-associated receptor kinase galacturonan-binding 43 111 IPR025287 GO:0030247
Stsc90648g00028 688 Pfam Wall-associated receptor kinase C-terminal 164 256 IPR032872 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90648g00028 Stsc-Chr90648 201921 221725 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90648g00028 39 688 Receptor kinase-like Gene Family AT1G25390 46.818 2.16e-172 505
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Stsc90648g00028 Pkinase 7.2e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90648g00028 - - aip:107643858 903.664