Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90648g00027 ATGGAAGAAGACGATAATTATGTTGAGTATGTGCCGGTGGCCAAGCGTCGTGCCATGGAAGCTCAGAAGATTCTCCAACGCAAGGGCCAGGCCTCTACTGCCACCGATGCTGATCTGGAAAAATTAAGAGTAGCAGAAACTAAGCCAAGTCTTCTGGTTAAGGCTTCACAGTTGAAACGAGAGCAGCCGGAGATTAGTGCAACAGAACAGATTGTTCAACAAGAGAAGGAAATGATTGAGAACTTGTCAGATAGAAAAACACTTATGTCTGTTCGTGAATTGGCTAAGGGGATTANNNNNNNNNNGTTGCTTACTGGGTGGAAGCCACCTTTACAGGTGAGAAGGATGTCTAAAAAGCAATGTGATTTGATTCGCAAGCAGTGGCATATAATTGTTGATGGTGAAGATATCCCACCTCCAATAAAAAATTTTAAGGATATGAGGTTTCCGGAGCCGGTTTTGAAGAAATTGAAAGCTAAGGGGATTGTGCAACCAACACCCATTCAGGTGCAAGGCCTTCCTGTTATCTTATCTGGGAGGGATATGATTGGGATTGCTTTCACAGGCTCAGGAAAAACCCTGGTCTTTGTGCTGCCAATGATCATGGTGGCAATGCAGGAGGAAATCATGATGCCTATTGCTCCTGGAGAAGGTCCATTCGGTCTGATAATTTGTCCGTCACGAGAACTGGCTCGGCAGACCTATGAAGTGATTGAACAGTTCTTGANNNNNNNNNNGGAGCTCAGGCCTTTGCTTTGCATTGGTGGAGTGGATATGAGATCACAGCTTGAGATTGTGAAGAAGGGTGTCCATATTGTTGTTGCAACTCCTGGTAGATTGAAGGATATGTTGGCCAAGAAGAAAATGAATCTTGATAACTGCAGGTATTTAACGTTAGATGAGGCTGATCGTTTGGTAGATTTAGGATTTGAAGATGACATCCGAGAAGTTTTTGATCACTTCAAAGCTCAAAGGCAAACTCTGTTATTTTCTGCCACTATGCCAACCAAAATTCAGAACTTCGCCAGAAGTGCCTTGGTGAAACCTATTATTGTTAACGTGGGACGGGCTGGGGCCGCAAATCTTGATGTGATCCAAGAGGTAGAATATGTTAAGCAAGAGGCAAAGATTGTTTATCTCCTTGAGTGCCTACAAAAAACCCCACCTCCCGTTTTGATATTCTGTGAGAATAAGGCAGATGTTGATGACATTCATGAGTATCTTCTCTTGAAAGGGGTTGAAGCGGTGGCTATTCATGGAGGCAAGGATCAGGAAGAGAGGGAGAATGCCATTTCCGCTTTTAAGGCTGGAAAGAAAGATGTGTTGGTAGCAACTGATGTTGCATCCAAAGGTTTGGATTTTCCAGATATTCAACATGTCATCAACTACGATATGCCAGCCGAAATTGAAAATTATGTCCATAGGATTGGTCGAACAGGAAGATGTGGGAAGACTGGTATAGCTACAACATTCATTAACAAGAACCAGAGTGAGACAACATTGCTAGATTTGAAGCACCTATTGCAAGAAGCAAAACAAAGGATACCTCCAGTTTTGGCCGAGTTGAATGATCCAATGGAAGACAATGATGCAATCACGGACATAAGTGGAGTGAAGGGATGTGCTTACTGTGGTGGTCTTGGTCATCGTATCCGCGATTGTCCCAAATTAGAACATCAGAAGAGCATGGCAATTGCAAATAATAGAAAGGATTATTTTGGTTCTGGAGGTTACAGGGGTGAAATTTGA 1749 0.4265 MEEDDNYVEYVPVAKRRAMEAQKILQRKGQASTATDADLEKLRVAETKPSLLVKASQLKREQPEISATEQIVQQEKEMIENLSDRKTLMSVRELAKGIXXXXLLTGWKPPLQVRRMSKKQCDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPVLKKLKAKGIVQPTPIQVQGLPVILSGRDMIGIAFTGSGKTLVFVLPMIMVAMQEEIMMPIAPGEGPFGLIICPSRELARQTYEVIEQFLXXXXELRPLLCIGGVDMRSQLEIVKKGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPIIVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEERENAISAFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELNDPMEDNDAITDISGVKGCAYCGGLGHRIRDCPKLEHQKSMAIANNRKDYFGSGGYRGEI 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90648g00027 582 Coils Coil 65 85 - -
Stsc90648g00027 582 SMART c2hcfinal6 540 556 IPR001878 GO:0003676|GO:0008270
Stsc90648g00027 582 Pfam DEAD/DEAH box helicase 166 340 IPR011545 GO:0003676|GO:0005524
Stsc90648g00027 582 SMART ultradead3 161 367 IPR014001 -
Stsc90648g00027 582 FunFam Probable ATP-dependent RNA helicase DDX41 109 353 - -
Stsc90648g00027 582 ProSiteProfiles Zinc finger CCHC-type profile. 541 556 IPR001878 GO:0003676|GO:0008270
Stsc90648g00027 582 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 218 498 IPR027417 -
Stsc90648g00027 582 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 142 170 IPR014014 GO:0003724
Stsc90648g00027 582 Coils Coil 494 514 - -
Stsc90648g00027 582 Gene3D - 109 356 IPR027417 -
Stsc90648g00027 582 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 98 523 - -
Stsc90648g00027 582 Pfam Zinc knuckle 540 556 IPR001878 GO:0003676|GO:0008270
Stsc90648g00027 582 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 173 352 IPR014001 -
Stsc90648g00027 582 Gene3D - 362 524 IPR027417 -
Stsc90648g00027 582 SUPERFAMILY Retrovirus zinc finger-like domains 540 561 IPR036875 GO:0003676|GO:0008270
Stsc90648g00027 582 CDD DEADc_DDX41 153 353 IPR044113 GO:0000398|GO:0003724|GO:0005524
Stsc90648g00027 582 CDD SF2_C_DEAD 364 492 - -
Stsc90648g00027 582 SMART helicmild6 402 483 IPR001650 -
Stsc90648g00027 582 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 363 523 IPR001650 -
Stsc90648g00027 582 FunFam Probable ATP-dependent RNA helicase DDX41 362 524 - -
Stsc90648g00027 582 Pfam Helicase conserved C-terminal domain 376 483 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90648g00027 Stsc-Chr90648 196265 200414 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90648g00027 130 522 Eukaryotic Initiation Factors Gene Family AT3G19760 31.658 3.80e-57 195
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90648g00027 K13116 - gmx:100819984 1084.71