LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc90648g00025	ATGAGTAGCAATGGCCAAACTTCTGGTGCTGGTAACAACGCCAGAGCTTTAATCTCCAACGCTGCTGCTGGTGCTGCTGCTGGGGCCATAGCAGCTACGTTTGTGTGTCCGTTGGATGTGATCAAGACAAGGTTACAAGTTCATGGTCTTCCTCCTGCACATAAAGGTAGTGTAATCATCACGAGCTTGCAGAATATAGTAAGAAATGAAGGTGTTAGGGGAATGTATCGTGGGCTTTCACCGACAATACTTGCTTTACTACCAAACTGGGCAGTTTACTTCACAGTTTATGAGCAACTAAAGGGATTGCTTCGTTCACAGGATGGTAGCAATGAACTCACAACTATTAGAAACGTTATAGCTGCTGCTGGTGCTGGGGGAGCAACAGCATTGTCGACGAACCCATTGTGGGTTGTTAAGACAAGACTCCAAACACAAGGAATGAGGCCGGATGTTGTTCCTTACAAAAGTGTTCTGTCCGCTTTGACAAGGATTACCCATGAGGAAGGATTGAGAGGACTATATAGTGGCATTTTGCCTTCATTGGCTGGTGTAAGTCATGTTGCGATTCAATTCCCAGCATATGAAAGTATCAAGTCGTACATGGCAAAAAAAGATAATACAACTGTTGACAAGCTTAGTCCTGGAAGTGTTGCCATTGCATCGTCAATTTCAAAAGTAATCGCCTCTGTAATGACTTATCCGCACGAGGTGATACGTTCAAGGCTGCAAGAGCAAGGCCAGTCCAAAAACATGGGGGTTCAGTATGCAGGAGTTATAGATTGTACTAAGAAGGTTTTCCATAAAGAAGGTATTCCGGGCTTTTATCGCGGTTGCGCAACCAATCTGTTAAGAACAACTCCATCTGCTGTTATTACCTTCACCAGTTACGAGATGATACATCGATTCTTGTTGCGGCTTATACCCGAGGACGAGGGCTATCCGCAGAGCCGTCCAAAATCCAAGGCACTTAACAAGTCCCAGGAAGAAGGCAGTAACATCATTAAGAATGACTCTTCTGATATGAGGCCATCGCCATCACAGTCTAACAAGAAAGGCTCATCAATTCCTTTGGGAAACAAATAG	1086	0.4457	MSSNGQTSGAGNNARALISNAAAGAAAGAIAATFVCPLDVIKTRLQVHGLPPAHKGSVIITSLQNIVRNEGVRGMYRGLSPTILALLPNWAVYFTVYEQLKGLLRSQDGSNELTTIRNVIAAAGAGGATALSTNPLWVVKTRLQTQGMRPDVVPYKSVLSALTRITHEEGLRGLYSGILPSLAGVSHVAIQFPAYESIKSYMAKKDNTTVDKLSPGSVAIASSISKVIASVMTYPHEVIRSRLQEQGQSKNMGVQYAGVIDCTKKVFHKEGIPGFYRGCATNLLRTTPSAVITFTSYEMIHRFLLRLIPEDEGYPQSRPKSKALNKSQEEGSNIIKNDSSDMRPSPSQSNKKGSSIPLGNK	361

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc90648g00025	361	ProSiteProfiles	Solute carrier (Solcar) repeat profile.	213	303	IPR018108	-
	Stsc90648g00025	361	SUPERFAMILY	Mitochondrial carrier	18	299	IPR023395	-
	Stsc90648g00025	361	FunFam	Nicotinamide adenine dinucleotide transporter 2, mitochondrial	16	304	-	-
	Stsc90648g00025	361	PRINTS	Mitochondrial carrier protein signature	128	146	IPR002067	GO:0055085
	Stsc90648g00025	361	PRINTS	Mitochondrial carrier protein signature	20	33	IPR002067	GO:0055085
	Stsc90648g00025	361	PRINTS	Mitochondrial carrier protein signature	78	98	IPR002067	GO:0055085
	Stsc90648g00025	361	PRINTS	Mitochondrial carrier protein signature	222	244	IPR002067	GO:0055085
	Stsc90648g00025	361	PRINTS	Mitochondrial carrier protein signature	33	47	IPR002067	GO:0055085
	Stsc90648g00025	361	MobiDBLite	consensus disorder prediction	313	361	-	-
	Stsc90648g00025	361	ProSiteProfiles	Solute carrier (Solcar) repeat profile.	15	103	IPR018108	-
	Stsc90648g00025	361	Gene3D	Mitochondrial carrier domain	109	306	IPR023395	-
	Stsc90648g00025	361	ProSiteProfiles	Solute carrier (Solcar) repeat profile.	113	201	IPR018108	-
	Stsc90648g00025	361	MobiDBLite	consensus disorder prediction	320	361	-	-
	Stsc90648g00025	361	PANTHER	MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED	18	309	IPR044712	GO:0006862\|GO:0055085
	Stsc90648g00025	361	Pfam	Mitochondrial carrier protein	112	205	IPR018108	-
	Stsc90648g00025	361	Pfam	Mitochondrial carrier protein	213	305	IPR018108	-
	Stsc90648g00025	361	Pfam	Mitochondrial carrier protein	18	105	IPR018108	-
	Stsc90648g00025	361	Gene3D	Mitochondrial carrier domain	3	108	IPR023395	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc90648g00025	Stsc-Chr90648	173021	179079	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc90648g00025	33	361	Chloroplast and Mitochondria Gene Families	AT1G25380	65.588	2.51e-151	429

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc90648g00025	K15115		-	gmx:100816376	560.451