Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90647g00011 ATGGTTCGTGCTATAAAGGCTGCAATTGGTGATGGGGTGTTGACTTTCATGTGGGTGTTCTGTTCCTCCATGTTGGGGATAGCTTCAAGCTCCATAGCAAGGTTTCTTGACATTCAGCACCTCCATTACAATGGCTTCCCTTACGCTTCATTCCTTGTCACTACTTTCCTTGTCTTCGTACTTGTCTTTCTCTTCACCATCATTGGCAATGCCTTGGGTGGTGCCAGCTTCAATCCCACCGGTACTGCTGCTTTCTATGCTGTTGGTCTCGGCTCTGACTCTCTCTTCTCCATGGCTCTGCGTTTTCCTGCCCAGGCTCTTGGTGCTGCTGGTGGAGCTTTGGCAATTATGGAGGTGATTCCTTCGAAATACAAGCACATGATGGGAGGCCCTTCATTGAAAGTGGATTTGCACACCGGTGCCGTTGTTGAGGGAGTGTTGACTTTTGTGATCACTTTTGCTGTGCTCTTCATCATCCTCAAGGGCCCTCGTAGCGATTTGCTCAAGACTTGGTTGCTCGCCATGTCGACTGTCGCTCTAGTCATGGTTGGATCGGCTTACACCGGTCCATCCATGAATCCTGCCAATGCGTTTGGTTGGGCATACCTAAACAACTGGCACAACACATGGGACCAATTCTATGTTTATTGGATCTGCCCCTTCGCCGGAGCAATATTTGCTGCGTGGTTTTTCCGCGCTATCTTCCCACCGCCGGAAGTGGCGACACAGAAGAAGAAACAGAAGAAAGCATGA 753 0.4967 MVRAIKAAIGDGVLTFMWVFCSSMLGIASSSIARFLDIQHLHYNGFPYASFLVTTFLVFVLVFLFTIIGNALGGASFNPTGTAAFYAVGLGSDSLFSMALRFPAQALGAAGGALAIMEVIPSKYKHMMGGPSLKVDLHTGAVVEGVLTFVITFAVLFIILKGPRSDLLKTWLLAMSTVALVMVGSAYTGPSMNPANAFGWAYLNNWHNTWDQFYVYWICPFAGAIFAAWFFRAIFPPPEVATQKKKQKKA 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90647g00011 250 Pfam Major intrinsic protein 4 230 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc90647g00011 250 Gene3D Glycerol uptake facilitator protein. 2 249 IPR023271 -
Stsc90647g00011 250 PRINTS Major intrinsic protein family signature 6 25 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc90647g00011 250 PRINTS Major intrinsic protein family signature 174 196 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc90647g00011 250 PRINTS Major intrinsic protein family signature 58 82 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc90647g00011 250 PRINTS Major intrinsic protein family signature 97 116 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc90647g00011 250 PRINTS Major intrinsic protein family signature 214 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc90647g00011 250 PRINTS Major intrinsic protein family signature 143 161 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc90647g00011 250 FunFam Aquaporin SIP1-1 2 249 - -
Stsc90647g00011 250 SUPERFAMILY Aquaporin-like 4 240 IPR023271 -
Stsc90647g00011 250 PANTHER AQUAPORIN SIP1-1 4 246 IPR044222 GO:0015250
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90647g00011 Stsc-Chr90647 98710 103595 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90647g00011 4 250 Major Intrinsic Protein MIP AT5G18290 55.242 5.19e-83 246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90647g00011 K09875 - gmx:102669186 401.364