Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90646g00001 ATGGAGGAAGCAATGGCGGCAAGGTATTGGTGTCATATGTGCTCACAAATGGTGAATCCCGTCACGGAAGGCGAGATCAAATGCCCATTTTGCCATAGTGGATTTGTTGAAGAAATGAGTAACACCACTTCTGTTAACAATATGCCGGAAGCTCCTGATTTCGGCCCTGACCGGACACTTTCCCTTTGGGCTCCTATCTTGTTAGGCATGATGAGCAATCCGCAAAATCATCGAAGGCCTAGGCGAATAGGGCTCGATGATGATGAGGACGGCAACAACCATGATGATCATAATAATGCTAGTGGCAATAATGGTAATGCAACAAATAATGGCAATGGTAACAGTAACGAAAATGGTAATGCTTTTGCACGCCGTAGTGGAGAAAACGAATATGATCGAGAGCTTGAGTCTATCCTTCGGAGGAGAAGGAGAAGCTCGGCTACCATATTTCAATTGCTTCAAGGCATTAGAGCTGGGTTGACATCTGAATTGAATGAGAATGCCGATGGTGATGGGCATGGTAGTGGTAGGGAAAGAGAAAGAGAAAGAGAAAGAGAAAGAGAGCGCGTAATCTTGATCAACCCTTTTAATCAGACTATTATTGTTCAAGGCTCCTATGACTGGAACCGCGGTCAGGGTGATAATCATACCCCCATTGGTTCTCTGGGTGACTATTTCATTGGTCCCGGTTTGGATTTATTGTTGCAGCATTTGGCCGAGAATGATCCCAATCGGCATGGAACTCCGCCTGCACAGAAGGAGGCCATCGAAGCATTGCCTACCGTGACAATCGACGAGAATATGCAATGTTCTATTTGTCTTGATGAACTTGAAGTTGGTTCTGAAGCCAAACAGATGCCCTGTAAACATATGTTTCATGGCGGATGTATCCTGCCTTGGTTGGAGCTTCATAGTTCTTGTCCGGTTTGCAGGTATCAGTTGCCCGCTGATGAATCTAAGCGCGAACCAGATGCGTCCTTGAGGACTAGCAGCAATCAAAGGGCAGAGGATGAAAATACTGCACATGACAATGTCGATGGGAATATCGAAGGAAGAAATGCCAATGGGGGTAGAAGATTCTCCTTTCCATGGCCTTTCAATGGTTTGTTTTCTTCATCAAGCCCTTCTTCAGCAGCATCTTCTTCTAGCAACAATAATTCAAATGGAGATAATGGTACTCGATAA 1185 0.4506 MEEAMAARYWCHMCSQMVNPVTEGEIKCPFCHSGFVEEMSNTTSVNNMPEAPDFGPDRTLSLWAPILLGMMSNPQNHRRPRRIGLDDDEDGNNHDDHNNASGNNGNATNNGNGNSNENGNAFARRSGENEYDRELESILRRRRRSSATIFQLLQGIRAGLTSELNENADGDGHGSGRERERERERERERVILINPFNQTIIVQGSYDWNRGQGDNHTPIGSLGDYFIGPGLDLLLQHLAENDPNRHGTPPAQKEAIEALPTVTIDENMQCSICLDELEVGSEAKQMPCKHMFHGGCILPWLELHSSCPVCRYQLPADESKREPDASLRTSSNQRAEDENTAHDNVDGNIEGRNANGGRRFSFPWPFNGLFSSSSPSSAASSSSNNNSNGDNGTR 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90646g00001 394 MobiDBLite consensus disorder prediction 318 356 - -
Stsc90646g00001 394 ProSiteProfiles Zinc finger RING-type profile. 270 311 IPR001841 -
Stsc90646g00001 394 MobiDBLite consensus disorder prediction 97 123 - -
Stsc90646g00001 394 MobiDBLite consensus disorder prediction 163 185 - -
Stsc90646g00001 394 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 236 317 IPR013083 -
Stsc90646g00001 394 FunFam E3 ubiquitin-protein ligase RING1-like 237 317 - -
Stsc90646g00001 394 MobiDBLite consensus disorder prediction 79 96 - -
Stsc90646g00001 394 MobiDBLite consensus disorder prediction 371 394 - -
Stsc90646g00001 394 SMART ring_2 270 310 IPR001841 -
Stsc90646g00001 394 MobiDBLite consensus disorder prediction 170 185 - -
Stsc90646g00001 394 SUPERFAMILY RING/U-box 260 318 - -
Stsc90646g00001 394 Pfam Ring finger domain 269 311 IPR001841 -
Stsc90646g00001 394 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 148 315 - -
Stsc90646g00001 394 MobiDBLite consensus disorder prediction 71 131 - -
Stsc90646g00001 394 Pfam zinc-ribbon 8 39 IPR039525 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90646g00001 Stsc-Chr90646 5148 7103 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90646g00001 187 317 C3H Transcription Factor Family AT1G26800 42.857 1.46e-28 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90646g00001 - K11982 aip:107625235 605.905