Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90645g00015 ATGGCCACAGACGCAACCGCCAACTTTAAAAAGAACCCTGATTTCCGGCCAGACTTCCACCCGCCTGAGAATCTACCCGCCGCCGTAACCGCCGCCGACGCAGCACACGACGGCCTCCACTTCTGGCAGTTCATGGTCGCCGGCTCCATCGCCGGCTGCGTGGAGCACATGGCAATGTTTCCTGTTGACACCGTCAAGACCCACATGCAAGCCCTCGGCTCCTGCCCTATCAAGTCCGTCAGCGTCCGTCACGCCCTCCGTTCAATTCTCCAATCGGAGGGTCCCTCTGCTCTCTACCGCGGCATCGCCGCCATGGGCCTTGGCGCCGGACCCGCTCACGCCGTCTATTTCTCCATTTACGAGACCTGCAAGAAAAGGTTTTCTGGTGGAAACCCTAATAACCCAATGGCTCACGCCGCTTCTGGTGTTGTTGCCACGGTGGCGAGCGACGCCGTTTTTACCCCTATGGATATGGTGAAGCAGAGGCTCCAATTGAGTAACAGTGGTTACAAGGGTGTTTGGGATTGTGTTAAGAGGGTGATGAGTGAGGAAGGGTTTGGGGCGTTTTATGCTTCATATAGGACCACAGTTTTGATGAATGCACCGTACACGGCGGTGCATTTTGCCACATATGAGGCTGCGAAGCGAGGTTTGATGGAGGTGTCGCCCGAGAGCGTGGACGATGAGAGGTTGGTGGTTCATGCCACGGCTGGGGCTGGTGCTGGTGCTTTGGCTGCTGCAGTCACAACTCCGCTTGATGTTGTTAAAACTCAGTTGCAATGTCAGGGTGTCTGCGGATGCGATAGATTCAAGAGCGGTTCAATTCAAGATGTAATTAAAACTATAGTGAAAAAGGATGGATATAGGGGGCTGATGCGAGGATGGATTCCAAGGATGCTGTTTCATGCTCCTGCAGCTGCTATATGCTGGTCTACATACGAAGCGGGAAAGTCATTTTTCCAAGATTTCAATCAGCCAAAGGACGTTGGCACTGTCACCTAA 1002 0.5379 MATDATANFKKNPDFRPDFHPPENLPAAVTAADAAHDGLHFWQFMVAGSIAGCVEHMAMFPVDTVKTHMQALGSCPIKSVSVRHALRSILQSEGPSALYRGIAAMGLGAGPAHAVYFSIYETCKKRFSGGNPNNPMAHAASGVVATVASDAVFTPMDMVKQRLQLSNSGYKGVWDCVKRVMSEEGFGAFYASYRTTVLMNAPYTAVHFATYEAAKRGLMEVSPESVDDERLVVHATAGAGAGALAAAVTTPLDVVKTQLQCQGVCGCDRFKSGSIQDVIKTIVKKDGYRGLMRGWIPRMLFHAPAAAICWSTYEAGKSFFQDFNQPKDVGTVT 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90645g00015 333 Pfam Mitochondrial carrier protein 39 128 IPR018108 -
Stsc90645g00015 333 Pfam Mitochondrial carrier protein 134 220 IPR018108 -
Stsc90645g00015 333 Pfam Mitochondrial carrier protein 230 322 IPR018108 -
Stsc90645g00015 333 FunFam Mitochondrial carrier protein, expressed 134 328 - -
Stsc90645g00015 333 SUPERFAMILY Mitochondrial carrier 37 314 IPR023395 -
Stsc90645g00015 333 ProSiteProfiles Solute carrier (Solcar) repeat profile. 229 319 IPR018108 -
Stsc90645g00015 333 ProSiteProfiles Solute carrier (Solcar) repeat profile. 133 217 IPR018108 -
Stsc90645g00015 333 ProSiteProfiles Solute carrier (Solcar) repeat profile. 39 126 IPR018108 -
Stsc90645g00015 333 PRINTS Mitochondrial carrier protein signature 57 71 IPR002067 GO:0055085
Stsc90645g00015 333 PRINTS Mitochondrial carrier protein signature 238 260 IPR002067 GO:0055085
Stsc90645g00015 333 PRINTS Mitochondrial carrier protein signature 44 57 IPR002067 GO:0055085
Stsc90645g00015 333 PRINTS Mitochondrial carrier protein signature 190 208 IPR002067 GO:0055085
Stsc90645g00015 333 PRINTS Mitochondrial carrier protein signature 148 166 IPR002067 GO:0055085
Stsc90645g00015 333 PANTHER MITOFERRIN-1-RELATED 30 322 - -
Stsc90645g00015 333 Gene3D Mitochondrial carrier domain 136 333 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90645g00015 Stsc-Chr90645 138317 141622 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90645g00015 1 324 Chloroplast and Mitochondria Gene Families AT1G07030 73.716 2.41e-171 477
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90645g00015 K15113 - gmx:100802640 580.482