Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90644g00044 ATGATGCAGCCAGGACCCGGAATGCCTCCACCAACCATGGGCCAGCAGCCACCGCAGCAGTACCAACAGCAGCCTCCGCAGCAGCAACCGCCATACATGATGATGCCGCCTCAGCAGGCGCCCCCACCCATGTGGGCTCCCTCCGCCCAGGCCCCGCCTCAGCAGCAGCAATCGTCTCAGCCCACCAGCGCTGACGAGGTCCGCACCCTCTGGATTGGCGACTTGCAGTACTGGATGGACGAGAACTACCTCTACAATTGTTTCGCTCACACCGGCGAGGTGACCTCAGTAAAGGTTATTAGGAACAAGCAAACTGGTCAGACTGAGGGTTATGGTTTTATTGAGTTTGGTAGCCGGGCCGGAGCTGAGAGAGTGCTTCAGCAATATAATGGAACGATTATGCCAAATGGTGGGCAGAGCTTCAGATTGAACTGGGCTACTTTTAGTGCTGGTGAGAAGCGTCATGATGATAGTCCAGATCACACCATATTTGTTGGTGATTTGGCTGCAGATGTTACTGATTACCTCCTTCAGGAGACATTTAGGACTCGATATAACTCAGTGAAGGGGGCAAAAGTTGTGATTGATAGGCTTACTGGCCGGACTAAGGGTTATGGTTTCGTAAGGTTTGCGGATGAAAGTGAACAAATGAGGGCCATGACTGAGATGCAAGGGGTTCTTTGTTCTACTAGACCCATGAGGATTGGACCGGCCTCTAATAAAAATCCTGCAACTCAGCAGAAAGCATCTTATCAGAATCCACAAGGTGCACAGAACGAGAATGATCCAAATAATACAACAATTTTTGTTGGCAATTTGGACCCCAATGTCACTGACGATCTTCTGAGACAAGTTTTTGGTCAGTATGGAGAGTTAGTTCATGTGAAGATTCCAACAGGCAAGCGATGTGGGTTTGTCCAATTTGCTGACAGGAGCTGTGCAGAAGAGGCACTAAGGGTTTTGAATGGATCCGCATTGGGTGGACAAAATGTACGGCTTTCGTGGGGCCGCAGCCCTTCAAACAAACAGTCTCAGGCAGATACAAACCAATGGAGTGGGGGGAGTGGTAGTGCCGGGAGTGGTGGATATTATGGATATGCTCAGGGTTATGAAAATTATGGTTATGCTCCTGCTGCACAAGACCCCAACATGTATGGCAGTTATCCGGGTTATCCTAACTACCAACCTCCGCAACAACAGCAACAATTAGGATATAGTTGA 1221 0.4955 MMQPGPGMPPPTMGQQPPQQYQQQPPQQQPPYMMMPPQQAPPPMWAPSAQAPPQQQQSSQPTSADEVRTLWIGDLQYWMDENYLYNCFAHTGEVTSVKVIRNKQTGQTEGYGFIEFGSRAGAERVLQQYNGTIMPNGGQSFRLNWATFSAGEKRHDDSPDHTIFVGDLAADVTDYLLQETFRTRYNSVKGAKVVIDRLTGRTKGYGFVRFADESEQMRAMTEMQGVLCSTRPMRIGPASNKNPATQQKASYQNPQGAQNENDPNNTTIFVGNLDPNVTDDLLRQVFGQYGELVHVKIPTGKRCGFVQFADRSCAEEALRVLNGSALGGQNVRLSWGRSPSNKQSQADTNQWSGGSGSAGSGGYYGYAQGYENYGYAPAAQDPNMYGSYPGYPNYQPPQQQQQLGYS 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90644g00044 406 SUPERFAMILY RNA-binding domain, RBD 148 253 IPR035979 GO:0003676
Stsc90644g00044 406 FunFam Polyadenylate-binding protein RBP45C 153 244 - -
Stsc90644g00044 406 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 70 135 IPR000504 GO:0003723
Stsc90644g00044 406 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 163 226 IPR000504 GO:0003723
Stsc90644g00044 406 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 268 331 IPR000504 GO:0003723
Stsc90644g00044 406 MobiDBLite consensus disorder prediction 386 406 - -
Stsc90644g00044 406 SMART rrm1_1 69 144 IPR000504 GO:0003723
Stsc90644g00044 406 SMART rrm1_1 162 236 IPR000504 GO:0003723
Stsc90644g00044 406 SMART rrm1_1 267 334 IPR000504 GO:0003723
Stsc90644g00044 406 CDD RRM1_SECp43_like 69 149 - -
Stsc90644g00044 406 CDD RRM2_SECp43_like 160 239 - -
Stsc90644g00044 406 MobiDBLite consensus disorder prediction 392 406 - -
Stsc90644g00044 406 MobiDBLite consensus disorder prediction 23 49 - -
Stsc90644g00044 406 Gene3D - 244 376 IPR012677 -
Stsc90644g00044 406 Gene3D - 148 243 IPR012677 -
Stsc90644g00044 406 MobiDBLite consensus disorder prediction 235 268 - -
Stsc90644g00044 406 FunFam Polyadenylate-binding protein RBP45 10 152 - -
Stsc90644g00044 406 MobiDBLite consensus disorder prediction 50 65 - -
Stsc90644g00044 406 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 68 148 IPR000504 GO:0003723
Stsc90644g00044 406 FunFam Polyadenylate-binding protein RBP45C 245 377 - -
Stsc90644g00044 406 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 161 240 IPR000504 GO:0003723
Stsc90644g00044 406 SUPERFAMILY RNA-binding domain, RBD 250 365 IPR035979 GO:0003676
Stsc90644g00044 406 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 57 342 - -
Stsc90644g00044 406 SUPERFAMILY RNA-binding domain, RBD 33 149 IPR035979 GO:0003676
Stsc90644g00044 406 Gene3D - 67 147 IPR012677 -
Stsc90644g00044 406 MobiDBLite consensus disorder prediction 1 65 - -
Stsc90644g00044 406 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 266 338 IPR000504 GO:0003723
Stsc90644g00044 406 MobiDBLite consensus disorder prediction 232 268 - -
Stsc90644g00044 406 MobiDBLite consensus disorder prediction 1 16 - -
Stsc90644g00044 406 MobiDBLite consensus disorder prediction 332 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90644g00044 Stsc-Chr90644 219184 222788 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90644g00044 69 348 Eukaryotic Initiation Factors Gene Family AT4G34110 28.070 2.35e-29 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90644g00044 - - aprc:113864230 584.719