Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90644g00027 ATGGAAAACTTCATCCTGTCTTCGTCTTCATCTTCATCTTCAGCTTCACCTCCTTCATCATCGCACATTTCAGGTGCAGCTTTTGACGACTATTCCGAGGACTTCTGCAGCATTTGTTTGGAGCCATTTGGCGTCAATGACCCGTCTACTATTACCTCTTGCAAACACGAATATCATCTGCACTGTATTCTTGAATGGTCAGAGAGAAGCAGAGAGTGTCCAATATGTTTGCAGCTGCTTTCTTTGATTGATCCTTCTAGCCAAGAGCTTCTAGCTGCAGTGGAGGCTGAAAAATGTTCAAGGTCAAGAAACATATATCCATCTTCATTCACTAGTTCTCATATTCCCCATGAACTGCTCAATTATGACTATGGTGATTCTTACTCAGATGAGTCTGATATTGATGATCAAATTATGCAACACCTAGTTGCTGCTTCCAGCAGATCTCGTTTCCTCCATAGACGGGAAAGGCAAAGAGCTTCTAGCGCAGGTCCGTCTGAGGTTCTTGTTTCCAACACTCCTTTGCATGTGGCTGCCATGCAACCAACACTCCCCACTTCACCCACGGGCAGTAGTTCACCAACTTCTGGTGTACCATCTGCTGTCGAGACTCAACATCCAACATCTGTATTTGCTTCGGTTGTTGAAGTTGCGAGAAATACTAATGCTGAGAATGATGTTCCTTTTAAACCCAGAGTTCTCTATACCCAGCCACCATCCGAGAGTGGAAGGAGACTAAATACTCCTGAGATGTTCTCTATCCCGGAGTCCTTTAAATCCAAATTTTCTGCTGCTTCAGCCAGGTATAAGGAATCAATAACCAAAAGCACACGTGGCCTTAAAGAGAAGTTACTTGCTCACAATGCCTCAGTAAAGGAGCTGAGTAAAGGTGTTCAGCGGGAGATGAATGCGGGAATTGCTGGTGTTGCACGGATGATTGAACGCCTTGATCTTTCCTCAAAGCGATCTAATTCTCCTCCTGCTCCTGCTGGCACTGGGGGAAGTTCGGGATCCCCTGTAAAAGGAAAGTCAGTCGATGAGGATGACAGTGACACTGTGCGTTCTCCTAGTATATACATTGAAAATGTGGTTCAAAATGTCAGTTCAGATANNNNNNNNNNCATGGTTGTTGGTCGAGTGGTTGCTGGTCGGGTGGAAATTCATCATCGTGTTCAGAGTGGAAATGATGCTGCTGTGAGGATATAG 1206 0.4461 MENFILSSSSSSSSASPPSSSHISGAAFDDYSEDFCSICLEPFGVNDPSTITSCKHEYHLHCILEWSERSRECPICLQLLSLIDPSSQELLAAVEAEKCSRSRNIYPSSFTSSHIPHELLNYDYGDSYSDESDIDDQIMQHLVAASSRSRFLHRRERQRASSAGPSEVLVSNTPLHVAAMQPTLPTSPTGSSSPTSGVPSAVETQHPTSVFASVVEVARNTNAENDVPFKPRVLYTQPPSESGRRLNTPEMFSIPESFKSKFSAASARYKESITKSTRGLKEKLLAHNASVKELSKGVQREMNAGIAGVARMIERLDLSSKRSNSPPAPAGTGGSSGSPVKGKSVDEDDSDTVRSPSIYIENVVQNVSSDXXXXMVVGRVVAGRVEIHHRVQSGNDAAVRI 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90644g00027 401 Pfam Ring finger domain 36 76 IPR001841 -
Stsc90644g00027 401 MobiDBLite consensus disorder prediction 317 354 - -
Stsc90644g00027 401 MobiDBLite consensus disorder prediction 153 205 - -
Stsc90644g00027 401 SUPERFAMILY RING/U-box 28 83 - -
Stsc90644g00027 401 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 7 81 IPR013083 -
Stsc90644g00027 401 MobiDBLite consensus disorder prediction 176 205 - -
Stsc90644g00027 401 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 19 84 - -
Stsc90644g00027 401 SMART ring_2 36 76 IPR001841 -
Stsc90644g00027 401 ProSiteProfiles Zinc finger RING-type profile. 36 76 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90644g00027 Stsc-Chr90644 143322 146113 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90644g00027 20 76 C3H Transcription Factor Family AT4G00335 49.123 1.02e-12 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90644g00027 K19043 - gmx:100775754 385.571