Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90644g00016 ATGGATAAAAAAGAAAGTGATCAATCTGTAACAAGAGGGAAAAGCACTCCATCTCAAACTCAGGTAGTAGTTGGTCCTTTTGTTCCTTCACCTCACCTAAGAGGTCAACAACATTCTCAACATTACATCCACCACCTACAACAACAACAAGAGTTTCACCATAAGCTTCACAACTTTTGGGAGAATCAGTTTCGCGAAATCGAGCAGGTGCCCGATTTCAGAAATCACAGCTTACCCTTGGCTAGAATCAAGAAGATCATGAAGGCTGATGAAAACGTGAAGATGATATCAGCAGAGGCTCCTATTATATTTGCCAAGGCTTGTGAAATGTTCATAATGGAACTGACAATGAGGGCTTGGAATAACGCTGAAGAGAACAAAAGGAGAACACTTCAGAAGAATGATATTGCTGCTGCAGTCACAAAAACTGATGTGTTTGATTTTCTTGTTGATGTTGTCCCTAGAGATGAATCTGTGGACCTTGGTTTATATGCTGGTATGAGAAGAGGTGGAGGCAATAATAATATTGTTCCTTACTATTATTATGTGCCACCTCAGCATATTGTGGGTCCACCACCATATGGTCCTCCTAGAGTGGCTATGGTGGGAAGACAAGTTCCTAATCAAAATAATTATGATGAGCAGCAAAATAGTGAAAATGGTACTCATCCTGTGTGTCCAAAGCAGCAAAATCATTCTTCAGATTCAGATGATTGA 717 0.4017 MDKKESDQSVTRGKSTPSQTQVVVGPFVPSPHLRGQQHSQHYIHHLQQQQEFHHKLHNFWENQFREIEQVPDFRNHSLPLARIKKIMKADENVKMISAEAPIIFAKACEMFIMELTMRAWNNAEENKRRTLQKNDIAAAVTKTDVFDFLVDVVPRDESVDLGLYAGMRRGGGNNNIVPYYYYVPPQHIVGPPPYGPPRVAMVGRQVPNQNNYDEQQNSENGTHPVCPKQQNHSSDSDD 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90644g00016 238 Gene3D Histone, subunit A 40 155 IPR009072 GO:0046982
Stsc90644g00016 238 MobiDBLite consensus disorder prediction 1 26 - -
Stsc90644g00016 238 MobiDBLite consensus disorder prediction 11 25 - -
Stsc90644g00016 238 SUPERFAMILY Histone-fold 38 149 IPR009072 GO:0046982
Stsc90644g00016 238 MobiDBLite consensus disorder prediction 194 238 - -
Stsc90644g00016 238 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 40 221 - -
Stsc90644g00016 238 Pfam Core histone H2A/H2B/H3/H4 68 140 IPR007125 GO:0003677
Stsc90644g00016 238 MobiDBLite consensus disorder prediction 204 231 - -
Stsc90644g00016 238 FunFam Nuclear transcription factor Y subunit gamma 42 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90644g00016 Stsc-Chr90644 109221 109937 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90644g00016 1 201 CCAAT-HAP5 Transcription Factor Family AT1G54830 53.234 2.03e-59 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Stsc90644g00016 Histone 1.3e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90644g00016 K08066 - han:110877767 216.468