Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90644g00014 ATGCAAGATTCCAATGTTCAAAGAAAAGCTCTGTTAAAGATAAGAAAAGATAACTCTACCTCCAAATGTGAGGGTCCAGTCAGAAAGAAAGATCAATCTAAGCTGATTATGGTCATCTCTGTGCTTCTAAGCAGTTCAGTGTTACTGAACTTGCTTCTATTAGTGGCAGGTTTTTCAGTTGTATACTGGTGGAGATCCAAGAGTTCTAAGCCAAATCAATCTAGCCAAGCCATTGTAGGCACTTGTCTTAGAAGTTTCACTTTTGAAGAGTTGAGGAAGGCAACGAATGAATTCAAGGATGTTCTTGGTCAAGGGGCATTTTCAACCGTCTACAAAGGAGTTTCATTTGATCATACCAGTACCAGGAACCACATTGCAGTTAAGAAGCTAAACAACATGGTCAAAGAAAATGAAGAAGAGTTCAAAAGAGAGGTAAGTACATTTAGTAGGACAAATCATAGGAATTTGGTCCAACTCTTGGGATTCTGCAATGAGGGAGAACACAGAATGCTTGTATATGAGTTCATGAGCAAAGGCTCTTTGGCAAACTTCCTTTTTGACACCCTTGAAAGGCCAAGTTGGTTTCAGAGAATGCAGATAGCATTGGAGACAGCTAGGGGAATCTTGTATTTGCATGAAGAGTGTAGCACTCAGATCATACATTGTGACATTAAACCTCAAAATGTTTTGCTTGATGAATCTTTCACTGCTAAGATATCTGACTTTGGCCTAGCCAAGCTTTTGAAAATTGGTCAATCTAGAACCAATACTGGGATAAGGGGAACTAGAGGGTATGTTGCTCCTGAGTGGTTTAGAAACATGCCAATCACCATCAAGGTTGATGTCTACAGCTATGGAATACTATTACTAGAGATCATTTGTTGCAGGAGGAGCTTTGAAGCAAATGCTGAGAATGAGAACCAGATGGTGCTGACAGATTGGGCCTATGATTGCTTTCATGAAAGGAAACTTGATTTGTTGGTGGAAGGTGACAATGAGGCCTTAGATGAGATGAAGATGGTGGAGAAGTATGTGATGGTTTCTCTATGGTGCATTCAGGAGGATCCATTACTGAGGCCAACCATGAAGAAAGTGTTGCAGATGCTTGAAGGGTCTGTAGATGTTCCAACCCCTCCTGATTTACCTTCATTCACAACTACCATGTGTCTGTAG 1173 0.4066 MQDSNVQRKALLKIRKDNSTSKCEGPVRKKDQSKLIMVISVLLSSSVLLNLLLLVAGFSVVYWWRSKSSKPNQSSQAIVGTCLRSFTFEELRKATNEFKDVLGQGAFSTVYKGVSFDHTSTRNHIAVKKLNNMVKENEEEFKREVSTFSRTNHRNLVQLLGFCNEGEHRMLVYEFMSKGSLANFLFDTLERPSWFQRMQIALETARGILYLHEECSTQIIHCDIKPQNVLLDESFTAKISDFGLAKLLKIGQSRTNTGIRGTRGYVAPEWFRNMPITIKVDVYSYGILLLEIICCRRSFEANAENENQMVLTDWAYDCFHERKLDLLVEGDNEALDEMKMVEKYVMVSLWCIQEDPLLRPTMKKVLQMLEGSVDVPTPPDLPSFTTTMCL 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90644g00014 390 Gene3D Transferase(Phosphotransferase) domain 1 176 382 - -
Stsc90644g00014 390 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 6 381 - -
Stsc90644g00014 390 SUPERFAMILY Protein kinase-like (PK-like) 71 370 IPR011009 -
Stsc90644g00014 390 Pfam Protein kinase domain 99 367 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90644g00014 390 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 176 377 - -
Stsc90644g00014 390 ProSitePatterns Serine/Threonine protein kinases active-site signature. 219 231 IPR008271 GO:0004672|GO:0006468
Stsc90644g00014 390 PIRSF TyrPK_CSF1-R 9 68 - -
Stsc90644g00014 390 PIRSF TyrPK_CSF1-R 196 299 - -
Stsc90644g00014 390 PIRSF TyrPK_CSF1-R 329 377 - -
Stsc90644g00014 390 PIRSF TyrPK_CSF1-R 90 204 - -
Stsc90644g00014 390 ProSiteProfiles Protein kinase domain profile. 96 373 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90644g00014 390 SMART serkin_6 96 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90644g00014 390 Gene3D Phosphorylase Kinase; domain 1 59 175 - -
Stsc90644g00014 390 FunFam S-receptor-like serine/threonine-protein kinase 65 175 - -
Stsc90644g00014 390 ProSitePatterns Protein kinases ATP-binding region signature. 102 129 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90644g00014 Stsc-Chr90644 97396 98718 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90644g00014 63 371 Receptor kinase-like Gene Family AT1G60800 40.373 3.70e-73 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Stsc90644g00014 Pkinase 6.3e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90644g00014 - - aip:107638596 687.182