Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90644g00005 ATGTCTCACATAGCTGTTGAGAGGAACAGGAGAAGGCAGATGAATGAACATCTCAAAGTTTTGAGATCCTTAACCCCTTCTTTCTATATTAAAAGGGGAGATCAAGCATCCATAATAGGGGGAGTTATAGAGTTCATCAAGGAGCTACACCAAGTGCTTCAAGCTTTGGAGTCCCAAAAAAGGAGAAAGAGCCTAAGCCCTAGCCCCGGCCCAAGCCCGAAAGCGCTGCAGCCGGCGTTTCATCAGCATGATAGCCCGCCGTCTGGAATAGGCGGTGGTTCCTTTAAGGAACTAGGAGCAAGTTGCAACTCTTCAGTTGCGGATGTGGAAGTGAAAATCTCAGGTTCTAATGTGATCCTGAGGGTTATTTCACACAGGATTCCGGGTCAAGTTGCAAAGATCATTGGTGTTTTAGAAGCACTTTCGTTTGAAGTACTTCATCTCAACATCAGTAGCATGGAGGATACAGTTCTCTACCATTTTGTTGTTAAGATAGGGCTGGAATGTGAATTGAGTTTGGAGGAACTAGCAATGGAAGTACAACAAAGCTTCTGCACACACCCGCCTATTATTACTGCGCTCTGA 585 0.453 MSHIAVERNRRRQMNEHLKVLRSLTPSFYIKRGDQASIIGGVIEFIKELHQVLQALESQKRRKSLSPSPGPSPKALQPAFHQHDSPPSGIGGGSFKELGASCNSSVADVEVKISGSNVILRVISHRIPGQVAKIIGVLEALSFEVLHLNISSMEDTVLYHFVVKIGLECELSLEELAMEVQQSFCTHPPIITAL 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90644g00005 194 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 1 49 IPR011598 GO:0046983
Stsc90644g00005 194 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 1 68 IPR036638 GO:0046983
Stsc90644g00005 194 Gene3D - 1 64 IPR036638 GO:0046983
Stsc90644g00005 194 FunFam Transcription factor MUTE 1 66 - -
Stsc90644g00005 194 MobiDBLite consensus disorder prediction 60 93 - -
Stsc90644g00005 194 Pfam Helix-loop-helix DNA-binding domain 2 49 IPR011598 GO:0046983
Stsc90644g00005 194 PANTHER TRANSCRIPTION FACTOR FAMA 1 184 IPR044283 GO:0003700|GO:0010052
Stsc90644g00005 194 SMART finulus 4 55 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90644g00005 Stsc-Chr90644 51968 53870 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90644g00005 1 193 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G06120 63.033 1.95e-85 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc90644g00005 HLH 2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90644g00005 - - gmx:100785890 302.367