Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90643g00026 ATGTCTGAGTTATTCTTGGCCGATAGGAAGCTCAAGCGCAAGTTAGAGGAGCCACCAACCATGGAAGACCAAGACTCATCAAAGGTATTACTTTCTTTGAGTCTTGGTCTCAACAACATGAAACGAAGTGGTGGTGACTCGTCCTCCTCCAAGCTCAACACATTTAAATTCTTGAAACCTTCATTGTCACATGTTGATGATGAAAACCAAAGGCAAGAACAACAACCACAACCACAGCCACGCTTGTTTCCTTGCAAGTTTTGTGACAAAAAATTTGCAAGCTCTCAAGCTTTGGGAGGACATCAAAACGCTCACAAGCGTGAGAGGATCCTCTCGAAAATGGACAAAATGCTTAACATGGGAACATTTCCGATTGATGCTAGTCATCAATTATGTGCTTTTCCAACCGCAACAAATTATATGCCTCCCTACCGTGGCTCGATGTCTCTTTACCAAGGTGCGCATATGCACCACATAGTTCATCATATGCCGTCCGCCGCCTTGCCTGGTTTTCGTTTCGGATCCAATTATGGAAATCAAGGCTTGAACAACAATATTCCACAGAGCTCCCGCCACCACGGTGGCCACCAACGAGATGCTACTGGATTTGGTCTCGGTAGTCTTCTCAGAAATAACTAA 639 0.4476 MSELFLADRKLKRKLEEPPTMEDQDSSKVLLSLSLGLNNMKRSGGDSSSSKLNTFKFLKPSLSHVDDENQRQEQQPQPQPRLFPCKFCDKKFASSQALGGHQNAHKRERILSKMDKMLNMGTFPIDASHQLCAFPTATNYMPPYRGSMSLYQGAHMHHIVHHMPSAALPGFRFGSNYGNQGLNNNIPQSSRHHGGHQRDATGFGLGSLLRNN 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90643g00026 212 ProSitePatterns Zinc finger C2H2 type domain signature. 85 105 IPR013087 -
Stsc90643g00026 212 MobiDBLite consensus disorder prediction 182 212 - -
Stsc90643g00026 212 Gene3D Classic Zinc Finger 62 122 - -
Stsc90643g00026 212 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 13 191 IPR044246 GO:0009788
Stsc90643g00026 212 ProSiteProfiles Zinc finger C2H2 type domain profile. 83 110 IPR013087 -
Stsc90643g00026 212 MobiDBLite consensus disorder prediction 1 23 - -
Stsc90643g00026 212 MobiDBLite consensus disorder prediction 1 28 - -
Stsc90643g00026 212 Pfam C2H2-type zinc finger 83 107 - -
Stsc90643g00026 212 SUPERFAMILY beta-beta-alpha zinc fingers 81 110 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90643g00026 Stsc-Chr90643 230713 231351 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90643g00026 17 120 C2H2 Transcription Factor Family AT1G80730 43.519 4.32e-15 69.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc90643g00026 zf-C2H2_6 9.6e-06 CL0361