Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90643g00023 ATGGAAGATGTTAACACTACCTGGCTACCATTCAACCATGAATTTGCCATTAGAAGGTTTTGCCCTGAAAGAATGGAGCAAGAGCAAAGAGAAGAAGAGTTGTATGATCAAGAAGCTGAGTTATGTTCATCCGATTTCACCATCAACCCATGTTTGGCTAATTCCTCAGAAGTTGATGACTTTGTTGAAAGCATCATCAACATGGATCATCACTATGACTATGATGATGATGATGATTACCATGACCATGGAGAAGAACAGGATCAAGATTCCCTAGAGAAGCACCAGAGTTTTGAATTCGATCACTCCATAATAATGATGAACGATGAAGATCATATTGATGCATATTCCATGGTGATAAATGATGATGATCATGTCTATGGAGGATATGCTCCAATTACCATGGAGGATGATGAAGAAACAGAGATAATGGAACAAATTATGGGTTGTTCTTATGGTGCTCCACCCGAGCTAGTGTCTACCGTGGAAGATCCGAGTGGAGGCATCGATCGAGGGTTGGATTTGATTCACATGTTGTTGGCTTGTGCCGAGGCAGTAGGATGCAGAGACACACAACAAGCACACTTTCTTCTCAATAGAATTTGGGGTGTGGCTAATCCTTATGGTAATTCATTGGAAAGGGTGTCCTATTATTTTGCCACGGGTCTGAAGCGTAGGCTCTCACTTCTTCCATTCAATACTACAACACAACACACAAGTTTTATTATGGAGGATGTTCCTTTGATTACAAGGGAGAATAAATTAGAAGCTTTTCAACTTCTTTGCCAAACAACTCCTTACATTGCCTTAGGGTTCATGGCTGCGAATGAAACTATTTATCAAAAATCAGTTGGAAAGAGTTCAATACACATAATTGATCTTGGAATGGAAAATACCTTTCAATGGCCTTCCTTGTTGAGGGCACTTGTTTCGAGACCAGAAGGGCCGCCAAGAATTCGGATCACCGGTCTAATTAGGGCCGAAGACTACACAAAACTCGAAGCCAGCATGAGTTTTCTTGTGGAGGAAGCAAAATCATTGGGAGTGGCATTGGAGTTTCGCCTAGTATCAGAGGCTCTTGTTCTTTCTCTTCTTACAAAGGAGAAGTTGCAATTGAGAGAAGGGGAAGTTTTATTTGTCAATAGTATCCTTCAATTGCATACATATGTTAACGAAAGTAGGGGGTTATTGAAGGAAATTTTGCTATCAATTAAGAAGCTTGGTCCTTGTACATTTACCATTGTAGAGCAAGATTCAAATCACAATGGACCTTTCTTCCTTGGAAGGTTCCTTGAATCTTTGCATTATTACTCGGCGATTTTCGATTCCCTTGAGGAATGTATGCCGAGGAATAGCAAGCAAAGGATGAAGGTAGAGGGTGCATATTTTGCTGAGGAAATTCACAACATTGTGGCCTACGAGGGGCCAGATAGGATGGAGAGACATGAAAGGGCCGAAAAGTGGCGACGACAGCTACGCCGGGCCGGGTTTCAAGTTATGCCATTGAAGTGCACTAGTCAAGCTAGGATGTTGCTCTCTGTCTATGATTGTGATGGATATACATTGTCAAGTGAGAAGGGTTGCCTTTTACTTGGGTGGAAAGGAAGACCTATAATAATGGTTTCTTCATGGCAAGTAACTCCTTTGTGA 1650 0.4152 MEDVNTTWLPFNHEFAIRRFCPERMEQEQREEELYDQEAELCSSDFTINPCLANSSEVDDFVESIINMDHHYDYDDDDDYHDHGEEQDQDSLEKHQSFEFDHSIIMMNDEDHIDAYSMVINDDDHVYGGYAPITMEDDEETEIMEQIMGCSYGAPPELVSTVEDPSGGIDRGLDLIHMLLACAEAVGCRDTQQAHFLLNRIWGVANPYGNSLERVSYYFATGLKRRLSLLPFNTTTQHTSFIMEDVPLITRENKLEAFQLLCQTTPYIALGFMAANETIYQKSVGKSSIHIIDLGMENTFQWPSLLRALVSRPEGPPRIRITGLIRAEDYTKLEASMSFLVEEAKSLGVALEFRLVSEALVLSLLTKEKLQLREGEVLFVNSILQLHTYVNESRGLLKEILLSIKKLGPCTFTIVEQDSNHNGPFFLGRFLESLHYYSAIFDSLEECMPRNSKQRMKVEGAYFAEEIHNIVAYEGPDRMERHERAEKWRRQLRRAGFQVMPLKCTSQARMLLSVYDCDGYTLSSEKGCLLLGWKGRPIIMVSSWQVTPL 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90643g00023 549 Pfam GRAS domain family 175 545 IPR005202 -
Stsc90643g00023 549 ProSiteProfiles GRAS family profile. 166 545 IPR005202 -
Stsc90643g00023 549 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 115 540 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90643g00023 Stsc-Chr90643 187984 189633 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90643g00023 170 547 GRAS Transcription Factor Family AT3G03450 37.403 8.18e-76 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Stsc90643g00023 GRAS 1.5e-104 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90643g00023 - - gmx:100814931 629.017