Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90643g00016 ATGGATAAATCAGAGCAGACTCAGCAGCAGCAGCAGCAACAACAACATGTGATGGGTGTTGCAGCAAATGCTAGCCAAATGGCTTATTCTTCTCACTACCAGACTGCTCCTATGATGGCATCTGGTACACCTGCTGTAGTTGTGCCTTCGCCGACGCAGCCTCCAACGGCTTTTTCAAATACCCCGCACCATCTTGCATACCAGCAAGCACAACACTTTCATCACCAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAGCTTCAAATGTTCTGGGCAAACCAAATGCATGAAATTGAGCAAACAATTGACTTTAAGAACCACAGCCTACCCCTTGCTCGCATTAAAAAGATCATGAAAGCCGATGAAGATGTCCGGATGATTTCGGCAGAAGCTCCAGTAATATTTGCAAAAGCATGTGAAATGTTCATCTTGGAGTTGACTTTGCGATCATGGATCCACACTGAAGAGAACAAGAGGAGAACTCTGCAAAAGAATGATATAGCAGCTGCAATTTCTAGAAATGATGTTTTTGATTTCTTGGTTGATATCATTCCAAGAGATGAGTTGAAAGAAGAGGGACTTGGAATAGCAAAAGCTACTATTCCAATGGTGGGTTCTCCGGCTGATATGCCATATTATTATGTCCCTCCGCAGCACCCTGTAGGACCTCCAGGGATGATAATGGGAAAACCAGTTGATCAAGCAGCACTGTATTCCACACCGCAGCCTCGAGCTCCAATGGCTTTCATACCGTGGCCGCAGCCACAATCCTCACAACAGCAGCCACCCCAACAGGAACAAACAGACTCTTGA 813 0.4637 MDKSEQTQQQQQQQQHVMGVAANASQMAYSSHYQTAPMMASGTPAVVVPSPTQPPTAFSNTPHHLAYQQAQHFHHQQQQQQQQQQQLQMFWANQMHEIEQTIDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRNDVFDFLVDIIPRDELKEEGLGIAKATIPMVGSPADMPYYYVPPQHPVGPPGMIMGKPVDQAALYSTPQPRAPMAFIPWPQPQSSQQQPPQQEQTDS 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90643g00016 270 MobiDBLite consensus disorder prediction 244 270 - -
Stsc90643g00016 270 SUPERFAMILY Histone-fold 65 180 IPR009072 GO:0046982
Stsc90643g00016 270 Gene3D Histone, subunit A 70 186 IPR009072 GO:0046982
Stsc90643g00016 270 Pfam Core histone H2A/H2B/H3/H4 64 171 IPR007125 GO:0003677
Stsc90643g00016 270 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 69 254 - -
Stsc90643g00016 270 FunFam Nuclear transcription factor Y subunit gamma 74 186 - -
Stsc90643g00016 270 MobiDBLite consensus disorder prediction 252 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90643g00016 Stsc-Chr90643 140231 142979 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90643g00016 90 262 CCAAT-HAP5 Transcription Factor Family AT1G54830 64.368 5.73e-73 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Stsc90643g00016 Histone 1.9e-17 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90643g00016 K08066 - gmx:100796987 401.749