LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc90643g00013	ATGGAGGAACAAATCCTTGTAGACCAAAACTTCCCTCTCTTCAAACCGACCTCCAAACCCTCCCTAAACCCTAATTCTGCCGTCAACAGCAATCACTCAACCTCGAAAACCGCCGCTGCTGCCACCACCACCACCACCACTGATTCCCCCTCCTCCTCCTCCTCCGCCTCCACATTCGCCGAACTCGGACTTGCCGAATGGGCTGTGAAGACATGCCGCGAGCTCGGGATGAAGCGTCCCCGGCGCGTCCAGTCGCACTGCATCCCGCACGTGCTGGAGGGCCGACACGTGCTCGGCATCGATGAAACCGGCAGCGGCAAGACCGCCGCCTTTGCTCTCCCAATCCTCCACCGCCTGTCAGAGCACCCGTTCGGCGTGTTCGCATTGGTAGTGACGCCCACTCGGGAGCTGGCGTTTCAGCTGGCGGAGCAGTTCCGCGCTCTCGGGTCCTGCCTCCACCTCCGCATCGCTGTGATTGTCGGCGGCATGGACATGCTCCGGCAGACCAAGGAGCTTGCTGCCAGGCCTCACGTTGTTATCGCCACGCCTGGGAGGATCAAGGCCTTGCTCGAGAATCCTGATATTCCTCAAGTTTTTGCCAGAACTAAGTTCCTTGTCTTGGATGAAGCAGATCGAGTCCTTGATGCCGGTTTTCAGGAGGAATTGAAATTTATCTTCAAGTGCTTACCAGAAAATCGGCAAAATCTGTTCTTTTCTGCAACAACCACAAGTAATCTGCAAAAGTTGTCTGAGCGTTACCGGGATAAACTGTATGTCTACGAGGCATATGAAGGCCTGAAAACTGTAGAAACACTTAAGCAACAGGCTATGTTCATCCCTAAGAAGGTTAAGGAAGTATATTTGATGCATATTTTATCAAAAATGGAAGATATGGGCATCCGGTCTGCCATGGTATTTATCGCTACATGCAGAGATTGTCATCGTTTAAGTTTAATGCTAGAAGTGCTTGATCTTGAAGCAGCAGCTCTATATTCATTTAAATCACAGGCTCAAAGACTTGAGGCACTTCAACAGTTCAAATCAGGGAAGGTTTCTATACTGCTAGCAACAGATGTTGCCAGCCGTGGTTTGGACATCCCTACAGTTGACCTTGTTATCAATTATGATGTTCCAAGGTTTCCACGAGATTATGTTCATCGTGTTGGTCGTACTGCGAGAGCAGGTAGAGGAGGACTGGCTTTGAGCCTTGTCACACAGAATGATGTCGAACTTGTTTGTGAAATAGAAGGTCTTATTGAAAGGCAACTTGAAATGATTGAATACAAAGAAAACGAGGTTCTTTCTATCATGAAAAAGGTTTTCAGTGCCAAAAATGTGGCAGAAATGAAGATGATGGATGACGGGTTTGAGGAGAAAGCAAAGGAGAGGAAAAAACAGAAACTGAAATTGCTAGCAGAGAAAGGATTGTTAAATAAAAGTGGTAAAAAGAGAAAAAGAAACAAAGGATTTGCAGAAGGAAAGAAACAGAAAAAAGAGGTGGAAGCATCGGCAGATAAATCATCAGTAAAAAAAGTGAGTAAGAAGAGGTAG	1551	0.4752	MEEQILVDQNFPLFKPTSKPSLNPNSAVNSNHSTSKTAAAATTTTTTDSPSSSSSASTFAELGLAEWAVKTCRELGMKRPRRVQSHCIPHVLEGRHVLGIDETGSGKTAAFALPILHRLSEHPFGVFALVVTPTRELAFQLAEQFRALGSCLHLRIAVIVGGMDMLRQTKELAARPHVVIATPGRIKALLENPDIPQVFARTKFLVLDEADRVLDAGFQEELKFIFKCLPENRQNLFFSATTTSNLQKLSERYRDKLYVYEAYEGLKTVETLKQQAMFIPKKVKEVYLMHILSKMEDMGIRSAMVFIATCRDCHRLSLMLEVLDLEAAALYSFKSQAQRLEALQQFKSGKVSILLATDVASRGLDIPTVDLVINYDVPRFPRDYVHRVGRTARAGRGGLALSLVTQNDVELVCEIEGLIERQLEMIEYKENEVLSIMKKVFSAKNVAEMKMMDDGFEEKAKERKKQKLKLLAEKGLLNKSGKKRKRNKGFAEGKKQKKEVEASADKSSVKKVSKKR	516

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc90643g00013	516	Gene3D	-	23	260	IPR027417	-
	Stsc90643g00013	516	ProSitePatterns	DEAD-box subfamily ATP-dependent helicases signature.	206	214	IPR000629	-
	Stsc90643g00013	516	PANTHER	ATP-DEPENDENT RNA HELICASE RHLE-RELATED	26	504	-	-
	Stsc90643g00013	516	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	125	413	IPR027417	-
	Stsc90643g00013	516	MobiDBLite	consensus disorder prediction	14	55	-	-
	Stsc90643g00013	516	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	294	434	IPR001650	-
	Stsc90643g00013	516	MobiDBLite	consensus disorder prediction	492	509	-	-
	Stsc90643g00013	516	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	57	85	IPR014014	GO:0003724
	Stsc90643g00013	516	SMART	ultradead3	76	275	IPR014001	-
	Stsc90643g00013	516	Pfam	DEAD/DEAH box helicase	82	249	IPR011545	GO:0003676\|GO:0005524
	Stsc90643g00013	516	SMART	helicmild6	314	395	IPR001650	-
	Stsc90643g00013	516	CDD	SF2_C_DEAD	272	404	-	-
	Stsc90643g00013	516	Pfam	Helicase conserved C-terminal domain	300	395	IPR001650	-
	Stsc90643g00013	516	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	88	260	IPR014001	-
	Stsc90643g00013	516	MobiDBLite	consensus disorder prediction	1	55	-	-
	Stsc90643g00013	516	CDD	DEADc_DDX49	59	261	-	-
	Stsc90643g00013	516	Gene3D	-	267	515	IPR027417	-
	Stsc90643g00013	516	MobiDBLite	consensus disorder prediction	473	516	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc90643g00013	Stsc-Chr90643	114785	119366	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc90643g00013	58	413	Eukaryotic Initiation Factors Gene Family	AT3G13920	31.742	5.97e-54	186

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc90643g00013	K14778		-	gmx:100798597	744.191