Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90643g00013 ATGGAGGAACAAATCCTTGTAGACCAAAACTTCCCTCTCTTCAAACCGACCTCCAAACCCTCCCTAAACCCTAATTCTGCCGTCAACAGCAATCACTCAACCTCGAAAACCGCCGCTGCTGCCACCACCACCACCACCACTGATTCCCCCTCCTCCTCCTCCTCCGCCTCCACATTCGCCGAACTCGGACTTGCCGAATGGGCTGTGAAGACATGCCGCGAGCTCGGGATGAAGCGTCCCCGGCGCGTCCAGTCGCACTGCATCCCGCACGTGCTGGAGGGCCGACACGTGCTCGGCATCGATGAAACCGGCAGCGGCAAGACCGCCGCCTTTGCTCTCCCAATCCTCCACCGCCTGTCAGAGCACCCGTTCGGCGTGTTCGCATTGGTAGTGACGCCCACTCGGGAGCTGGCGTTTCAGCTGGCGGAGCAGTTCCGCGCTCTCGGGTCCTGCCTCCACCTCCGCATCGCTGTGATTGTCGGCGGCATGGACATGCTCCGGCAGACCAAGGAGCTTGCTGCCAGGCCTCACGTTGTTATCGCCACGCCTGGGAGGATCAAGGCCTTGCTCGAGAATCCTGATATTCCTCAAGTTTTTGCCAGAACTAAGTTCCTTGTCTTGGATGAAGCAGATCGAGTCCTTGATGCCGGTTTTCAGGAGGAATTGAAATTTATCTTCAAGTGCTTACCAGAAAATCGGCAAAATCTGTTCTTTTCTGCAACAACCACAAGTAATCTGCAAAAGTTGTCTGAGCGTTACCGGGATAAACTGTATGTCTACGAGGCATATGAAGGCCTGAAAACTGTAGAAACACTTAAGCAACAGGCTATGTTCATCCCTAAGAAGGTTAAGGAAGTATATTTGATGCATATTTTATCAAAAATGGAAGATATGGGCATCCGGTCTGCCATGGTATTTATCGCTACATGCAGAGATTGTCATCGTTTAAGTTTAATGCTAGAAGTGCTTGATCTTGAAGCAGCAGCTCTATATTCATTTAAATCACAGGCTCAAAGACTTGAGGCACTTCAACAGTTCAAATCAGGGAAGGTTTCTATACTGCTAGCAACAGATGTTGCCAGCCGTGGTTTGGACATCCCTACAGTTGACCTTGTTATCAATTATGATGTTCCAAGGTTTCCACGAGATTATGTTCATCGTGTTGGTCGTACTGCGAGAGCAGGTAGAGGAGGACTGGCTTTGAGCCTTGTCACACAGAATGATGTCGAACTTGTTTGTGAAATAGAAGGTCTTATTGAAAGGCAACTTGAAATGATTGAATACAAAGAAAACGAGGTTCTTTCTATCATGAAAAAGGTTTTCAGTGCCAAAAATGTGGCAGAAATGAAGATGATGGATGACGGGTTTGAGGAGAAAGCAAAGGAGAGGAAAAAACAGAAACTGAAATTGCTAGCAGAGAAAGGATTGTTAAATAAAAGTGGTAAAAAGAGAAAAAGAAACAAAGGATTTGCAGAAGGAAAGAAACAGAAAAAAGAGGTGGAAGCATCGGCAGATAAATCATCAGTAAAAAAAGTGAGTAAGAAGAGGTAG 1551 0.4752 MEEQILVDQNFPLFKPTSKPSLNPNSAVNSNHSTSKTAAAATTTTTTDSPSSSSSASTFAELGLAEWAVKTCRELGMKRPRRVQSHCIPHVLEGRHVLGIDETGSGKTAAFALPILHRLSEHPFGVFALVVTPTRELAFQLAEQFRALGSCLHLRIAVIVGGMDMLRQTKELAARPHVVIATPGRIKALLENPDIPQVFARTKFLVLDEADRVLDAGFQEELKFIFKCLPENRQNLFFSATTTSNLQKLSERYRDKLYVYEAYEGLKTVETLKQQAMFIPKKVKEVYLMHILSKMEDMGIRSAMVFIATCRDCHRLSLMLEVLDLEAAALYSFKSQAQRLEALQQFKSGKVSILLATDVASRGLDIPTVDLVINYDVPRFPRDYVHRVGRTARAGRGGLALSLVTQNDVELVCEIEGLIERQLEMIEYKENEVLSIMKKVFSAKNVAEMKMMDDGFEEKAKERKKQKLKLLAEKGLLNKSGKKRKRNKGFAEGKKQKKEVEASADKSSVKKVSKKR 516
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Stsc90643g00013 516 Gene3D - 23 260 IPR027417 -
Stsc90643g00013 516 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 206 214 IPR000629 -
Stsc90643g00013 516 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 26 504 - -
Stsc90643g00013 516 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 125 413 IPR027417 -
Stsc90643g00013 516 MobiDBLite consensus disorder prediction 14 55 - -
Stsc90643g00013 516 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 294 434 IPR001650 -
Stsc90643g00013 516 MobiDBLite consensus disorder prediction 492 509 - -
Stsc90643g00013 516 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 57 85 IPR014014 GO:0003724
Stsc90643g00013 516 SMART ultradead3 76 275 IPR014001 -
Stsc90643g00013 516 Pfam DEAD/DEAH box helicase 82 249 IPR011545 GO:0003676|GO:0005524
Stsc90643g00013 516 SMART helicmild6 314 395 IPR001650 -
Stsc90643g00013 516 CDD SF2_C_DEAD 272 404 - -
Stsc90643g00013 516 Pfam Helicase conserved C-terminal domain 300 395 IPR001650 -
Stsc90643g00013 516 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 88 260 IPR014001 -
Stsc90643g00013 516 MobiDBLite consensus disorder prediction 1 55 - -
Stsc90643g00013 516 CDD DEADc_DDX49 59 261 - -
Stsc90643g00013 516 Gene3D - 267 515 IPR027417 -
Stsc90643g00013 516 MobiDBLite consensus disorder prediction 473 516 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Stsc90643g00013 Stsc-Chr90643 114785 119366 Dispersed/Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90643g00013 58 413 Eukaryotic Initiation Factors Gene Family AT3G13920 31.742 5.97e-54 186
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90643g00013 K14778 - gmx:100798597 744.191