Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Stsc90643g00013 | ATGGAGGAACAAATCCTTGTAGACCAAAACTTCCCTCTCTTCAAACCGACCTCCAAACCCTCCCTAAACCCTAATTCTGCCGTCAACAGCAATCACTCAACCTCGAAAACCGCCGCTGCTGCCACCACCACCACCACCACTGATTCCCCCTCCTCCTCCTCCTCCGCCTCCACATTCGCCGAACTCGGACTTGCCGAATGGGCTGTGAAGACATGCCGCGAGCTCGGGATGAAGCGTCCCCGGCGCGTCCAGTCGCACTGCATCCCGCACGTGCTGGAGGGCCGACACGTGCTCGGCATCGATGAAACCGGCAGCGGCAAGACCGCCGCCTTTGCTCTCCCAATCCTCCACCGCCTGTCAGAGCACCCGTTCGGCGTGTTCGCATTGGTAGTGACGCCCACTCGGGAGCTGGCGTTTCAGCTGGCGGAGCAGTTCCGCGCTCTCGGGTCCTGCCTCCACCTCCGCATCGCTGTGATTGTCGGCGGCATGGACATGCTCCGGCAGACCAAGGAGCTTGCTGCCAGGCCTCACGTTGTTATCGCCACGCCTGGGAGGATCAAGGCCTTGCTCGAGAATCCTGATATTCCTCAAGTTTTTGCCAGAACTAAGTTCCTTGTCTTGGATGAAGCAGATCGAGTCCTTGATGCCGGTTTTCAGGAGGAATTGAAATTTATCTTCAAGTGCTTACCAGAAAATCGGCAAAATCTGTTCTTTTCTGCAACAACCACAAGTAATCTGCAAAAGTTGTCTGAGCGTTACCGGGATAAACTGTATGTCTACGAGGCATATGAAGGCCTGAAAACTGTAGAAACACTTAAGCAACAGGCTATGTTCATCCCTAAGAAGGTTAAGGAAGTATATTTGATGCATATTTTATCAAAAATGGAAGATATGGGCATCCGGTCTGCCATGGTATTTATCGCTACATGCAGAGATTGTCATCGTTTAAGTTTAATGCTAGAAGTGCTTGATCTTGAAGCAGCAGCTCTATATTCATTTAAATCACAGGCTCAAAGACTTGAGGCACTTCAACAGTTCAAATCAGGGAAGGTTTCTATACTGCTAGCAACAGATGTTGCCAGCCGTGGTTTGGACATCCCTACAGTTGACCTTGTTATCAATTATGATGTTCCAAGGTTTCCACGAGATTATGTTCATCGTGTTGGTCGTACTGCGAGAGCAGGTAGAGGAGGACTGGCTTTGAGCCTTGTCACACAGAATGATGTCGAACTTGTTTGTGAAATAGAAGGTCTTATTGAAAGGCAACTTGAAATGATTGAATACAAAGAAAACGAGGTTCTTTCTATCATGAAAAAGGTTTTCAGTGCCAAAAATGTGGCAGAAATGAAGATGATGGATGACGGGTTTGAGGAGAAAGCAAAGGAGAGGAAAAAACAGAAACTGAAATTGCTAGCAGAGAAAGGATTGTTAAATAAAAGTGGTAAAAAGAGAAAAAGAAACAAAGGATTTGCAGAAGGAAAGAAACAGAAAAAAGAGGTGGAAGCATCGGCAGATAAATCATCAGTAAAAAAAGTGAGTAAGAAGAGGTAG | 1551 | 0.4752 | MEEQILVDQNFPLFKPTSKPSLNPNSAVNSNHSTSKTAAAATTTTTTDSPSSSSSASTFAELGLAEWAVKTCRELGMKRPRRVQSHCIPHVLEGRHVLGIDETGSGKTAAFALPILHRLSEHPFGVFALVVTPTRELAFQLAEQFRALGSCLHLRIAVIVGGMDMLRQTKELAARPHVVIATPGRIKALLENPDIPQVFARTKFLVLDEADRVLDAGFQEELKFIFKCLPENRQNLFFSATTTSNLQKLSERYRDKLYVYEAYEGLKTVETLKQQAMFIPKKVKEVYLMHILSKMEDMGIRSAMVFIATCRDCHRLSLMLEVLDLEAAALYSFKSQAQRLEALQQFKSGKVSILLATDVASRGLDIPTVDLVINYDVPRFPRDYVHRVGRTARAGRGGLALSLVTQNDVELVCEIEGLIERQLEMIEYKENEVLSIMKKVFSAKNVAEMKMMDDGFEEKAKERKKQKLKLLAEKGLLNKSGKKRKRNKGFAEGKKQKKEVEASADKSSVKKVSKKR | 516 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Stsc90643g00013 | 516 | Gene3D | - | 23 | 260 | IPR027417 | - | |
Stsc90643g00013 | 516 | ProSitePatterns | DEAD-box subfamily ATP-dependent helicases signature. | 206 | 214 | IPR000629 | - | |
Stsc90643g00013 | 516 | PANTHER | ATP-DEPENDENT RNA HELICASE RHLE-RELATED | 26 | 504 | - | - | |
Stsc90643g00013 | 516 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 125 | 413 | IPR027417 | - | |
Stsc90643g00013 | 516 | MobiDBLite | consensus disorder prediction | 14 | 55 | - | - | |
Stsc90643g00013 | 516 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 294 | 434 | IPR001650 | - | |
Stsc90643g00013 | 516 | MobiDBLite | consensus disorder prediction | 492 | 509 | - | - | |
Stsc90643g00013 | 516 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 57 | 85 | IPR014014 | GO:0003724 | |
Stsc90643g00013 | 516 | SMART | ultradead3 | 76 | 275 | IPR014001 | - | |
Stsc90643g00013 | 516 | Pfam | DEAD/DEAH box helicase | 82 | 249 | IPR011545 | GO:0003676|GO:0005524 | |
Stsc90643g00013 | 516 | SMART | helicmild6 | 314 | 395 | IPR001650 | - | |
Stsc90643g00013 | 516 | CDD | SF2_C_DEAD | 272 | 404 | - | - | |
Stsc90643g00013 | 516 | Pfam | Helicase conserved C-terminal domain | 300 | 395 | IPR001650 | - | |
Stsc90643g00013 | 516 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 88 | 260 | IPR014001 | - | |
Stsc90643g00013 | 516 | MobiDBLite | consensus disorder prediction | 1 | 55 | - | - | |
Stsc90643g00013 | 516 | CDD | DEADc_DDX49 | 59 | 261 | - | - | |
Stsc90643g00013 | 516 | Gene3D | - | 267 | 515 | IPR027417 | - | |
Stsc90643g00013 | 516 | MobiDBLite | consensus disorder prediction | 473 | 516 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Stsc90643g00013 | Stsc-Chr90643 | 114785 | 119366 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Stsc90643g00013 | 58 | 413 | Eukaryotic Initiation Factors Gene Family | AT3G13920 | 31.742 | 5.97e-54 | 186 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Stsc90643g00013 | K14778 | - | gmx:100798597 | 744.191 |