LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc90642g00034	ATGCTCACTTCACAACCCGATCCCAATCTCACTGAGAAATCATGGCACCTCCTTTCCCTTCTTCTTCAAATCGGCCACCCTGTCCTCCCTCAACACCTCGCCTCCTGCTGCAACCTCTTCCCCACGTGCCCCGACTTCATCGCCCACGTGACCTCAATCCCTCACTCCCCGATCCGCCTCAATGCTAACGGACTCGTCACGCCTTCTGACGTCGCCGTTTACGCCCTTGGCAGGTTCCTGACGGTTTCCATTGACCGCCGGTTTCTGTTTTGGAATATTCCAGAATGCTCCGGCTGGTCTAAGAAACGGAAGGTGGATGCGGATGTGGTTAACTTTCCTGCTGCTAAGAGGAGGTTGTCTTTCACTTCTGCTGGAGTGGTTGAAAGAGATCAAAGGAGATTAACAGTTGGCGATGGGGTTCTAGAACTATCTTTGGAGAGTTATGCGCATGATGCAAAGACTATGATGGGAAGCAACATCCCTGCATTGAAATTTGGATCAGAAAATATGCAGATCGAGAATTCTATTATCCCTTTGAGCATTGTTAAAAATGGCGAGTGTTTTGATTGTCCACCACCAAATTTTGAATGTTGCGTGACTGATAATGATACAAGCAAAATCATGTTCCAAGCAGAGGTTTCTGGTCCTGCAACTAAAGCTAGTGATAGTTTGTTCATAACCAGAAATGACATAGCTTGTGAGAAGGTAGCAGGTACAGATTCATTCATGCAATCTAATCTCTCTGTCAACCATGCTCAGCCAACTGGTTTCCAAGATACCTTACTTTGCAATGAAACTCTTGTTGGTAACATTGATTTGGGAAAGAAAATGGACAACTTTGACGCACCAGGGAGTGAATTGCCTGAGCAAAATAATATTGATTCTGCAGATGATATTTGGAAAACTAATACATGCAAAGATCCAATAAGAGAATCGAAGAAGGAAGATAAAGAAGGCTTGCGAGTGGAAATTGATCTAAATAAAGAGGCGATTGATTCTGACATGGAGCAAGAGAAGGGAGATGTTTTTGAGAGGGCCCATATTGCACTAGTTGCAGAAGAACTTAAAAATGGCGAGGAACCAGAAAATCATTTATCTTTGTTCGATTTGGACAACAAAGAGTGTACAGTGAGAAACATGGGGACTTCAACTCCAAAGCAGCTTCAAAAATCTCCTTCCATATCAAAGGAAGGACAGAGGAATGATTTGCAACCAAAGTTACAAGTCCTCACACAGTCACTAGCCTGTAACATATCTAATAAAGTCCCAGAAGATGTTGATCAATGTAAAAACGATGAGACCAAGAAATGTCTTCTGAAGTACAAACGAAAGCAAAACCACAAGGAGAACCTAGTAGAAACTATCTCCACGACTCCTAAGGTGGAGAAAAAAGCACAACCATCTTTTGAAGCCTTTACAATAGAGGAGGAAGAAGGTTCAGGTGGTTATGGAACTGTTTACCGTGCCCGAAGAAGGGCTGATGGAAAAAAACTTGCAATTAAATGTCCCCATGATAATGCTCATAAAAACCATATAAATAATGAGCGGAGTATGCTTGAGCGTTTTGGGGGTAGAAGTTTCATAATAAAGTTTGAAGGTTCTTTCAAAAGTGGTAGCAATGACTGCTTTGTTTTGGAACATATTGAGCATGATAAACCTGAGGTTTTGAAAAGAGAAATTGATATAATTCAGCTTCAGTGGTATGCATATTGCTTGTTCAGAGCCCTTGCCTGCTTACACAAAGAGGGAGTTGTTCATAGAGATGTTAAACCTGGAAACTTCCTCTTTTCCCGAAAGCTAAGCAAGGGCTACCTCATTGATTTCAACCTTGCCATGGATATAAAGCAGAAGTACAACAATGGAAGTAAATCAAAACTGGGCCTCGATACATTAAACAATGTGCCTGCACCATCTGGTTCTCGCCCATTGGTCCATGAAAAGAACATTGGAGGAAGGAAATCCATGACATACAACAAAAGGGAATTGGCAGATTATAAGAAAAATCCTGAGCTTATTAATAGGCATGCAAAGCAGAATGCTTATGCTGGTTCTCTGAAAAATTGTCCTGATAAGATTGGCGGAAATTTACTTAGAGCACAAGGAACAGAGGGCTCGGGTATAACCTCGACAAAAGATGTAACCAGCACTAGGACTGCTTCTGCAGAAAGGCTCAGGGAGCCCCTGCCTACCCAAGGAAGAAAGGGGCTTCTCAGTTTTCTTCATAATTCTGTGCAATCTGCAAGCAATAGCTCCATTAAAGGTCCTTCTTCCCAAAGGAAAAGAGTAACTGCCCCTTCAGGCAAGGTAGATGGCAAGATGGTTTATCTTACACCGATGCCTTTACATTCATCTGTTGCTGCTGGGTTATTGAGAAGCAAAGGTGATGGAAAACTCAAAAGAGAAGGTTCCTGTGTTGGCACTAAGGGATTCCGTGCTCCTGAGGTTTTGCTTAAGTCTCAGTTTCAGAGTCAAAAAGTTGATATTTGGTCAGCTGGAGTCACTTTGCTTTACATGGTGATTGGGAGGACTCCTTTCACTGGCGACCCTGAACAGAATATGAAAGACATTGCTAAATTACGGGGCAGTGAAGAGCTTTGGGAAGTTGCCAAGCTACATGACCGTGAAGTATCTTTTCCAATGGAGTTACTAGATGAAAGGTACTTGCAAGCATGGGACATAGAAAACTGGTGCAAGCTCAACACAAGGAGACCTGAGTTTCATGAAAGCATCCCCAAATCATTGTTTGATCTAATAGATAAGTGTCTAACAGTGAATCCAAGAAGTAGGATCAGTGTTGAAGAAGCTCTAAGGCATGAGTTCTTTGCCTCATGCAATGAGAGATTGAGAAAGGGAAGGATGATCCGAAGAGGTATCAGCTCAGATACTGCAGCTTCAAGCTTATTGTGA	2907	0.4259	MLTSQPDPNLTEKSWHLLSLLLQIGHPVLPQHLASCCNLFPTCPDFIAHVTSIPHSPIRLNANGLVTPSDVAVYALGRFLTVSIDRRFLFWNIPECSGWSKKRKVDADVVNFPAAKRRLSFTSAGVVERDQRRLTVGDGVLELSLESYAHDAKTMMGSNIPALKFGSENMQIENSIIPLSIVKNGECFDCPPPNFECCVTDNDTSKIMFQAEVSGPATKASDSLFITRNDIACEKVAGTDSFMQSNLSVNHAQPTGFQDTLLCNETLVGNIDLGKKMDNFDAPGSELPEQNNIDSADDIWKTNTCKDPIRESKKEDKEGLRVEIDLNKEAIDSDMEQEKGDVFERAHIALVAEELKNGEEPENHLSLFDLDNKECTVRNMGTSTPKQLQKSPSISKEGQRNDLQPKLQVLTQSLACNISNKVPEDVDQCKNDETKKCLLKYKRKQNHKENLVETISTTPKVEKKAQPSFEAFTIEEEEGSGGYGTVYRARRRADGKKLAIKCPHDNAHKNHINNERSMLERFGGRSFIIKFEGSFKSGSNDCFVLEHIEHDKPEVLKREIDIIQLQWYAYCLFRALACLHKEGVVHRDVKPGNFLFSRKLSKGYLIDFNLAMDIKQKYNNGSKSKLGLDTLNNVPAPSGSRPLVHEKNIGGRKSMTYNKRELADYKKNPELINRHAKQNAYAGSLKNCPDKIGGNLLRAQGTEGSGITSTKDVTSTRTASAERLREPLPTQGRKGLLSFLHNSVQSASNSSIKGPSSQRKRVTAPSGKVDGKMVYLTPMPLHSSVAAGLLRSKGDGKLKREGSCVGTKGFRAPEVLLKSQFQSQKVDIWSAGVTLLYMVIGRTPFTGDPEQNMKDIAKLRGSEELWEVAKLHDREVSFPMELLDERYLQAWDIENWCKLNTRRPEFHESIPKSLFDLIDKCLTVNPRSRISVEEALRHEFFASCNERLRKGRMIRRGISSDTAASSLL	968

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc90642g00034	968	Gene3D	Transferase(Phosphotransferase) domain 1	436	628	-	-
	Stsc90642g00034	968	MobiDBLite	consensus disorder prediction	380	401	-	-
	Stsc90642g00034	968	SUPERFAMILY	Protein kinase-like (PK-like)	454	945	IPR011009	-
	Stsc90642g00034	968	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	584	596	IPR008271	GO:0004672\|GO:0006468
	Stsc90642g00034	968	SMART	serkin_6	472	941	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc90642g00034	968	PANTHER	OVARIAN-SPECIFIC SERINE/THREONINE-PROTEIN KINASE LOK-RELATED	444	948	-	-
	Stsc90642g00034	968	MobiDBLite	consensus disorder prediction	701	721	-	-
	Stsc90642g00034	968	MobiDBLite	consensus disorder prediction	747	766	-	-
	Stsc90642g00034	968	FunFam	Kinase like protein	781	952	-	-
	Stsc90642g00034	968	MobiDBLite	consensus disorder prediction	747	763	-	-
	Stsc90642g00034	968	MobiDBLite	consensus disorder prediction	696	732	-	-
	Stsc90642g00034	968	ProSiteProfiles	Protein kinase domain profile.	472	941	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc90642g00034	968	FunFam	Probable serine/threonine-protein kinase DDB_G0291918	464	627	-	-
	Stsc90642g00034	968	Gene3D	Transferase(Phosphotransferase) domain 1	786	958	-	-
	Stsc90642g00034	968	Pfam	Protein kinase domain	803	941	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc90642g00034	968	Pfam	Protein kinase domain	474	619	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc90642g00034	Stsc-Chr90642	189562	195578	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc90642g00034	448	611	AGC Kinase Gene Family	AT3G17850	31.250	6.04e-11	64.7

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	Group-Pl-2	Stsc90642g00034		Pkinase	9.2e-20	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc90642g00034	K02214		-	gmx:100783107	1043.11