Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Stsc90642g00018 | ATGGCAGACGAGGAAGAGGAGGTTAAGGAGTCTATAGATGAATATGAAAAAGATGAACGGTTAGATTTGGAGGATAATGATCCTGAATATGAACCGGAGGAGTATATTGGAGTTGATTATGATGAGAAGGAAATTGAACAAGATGATGTTCATGAGCTGGTTGATGAAGTAGAGGAAGAAGCTGAAGACAATGCTGGTGAAGAAGAGGGTGACACTGGTGAGGAAGAAGTTGAAGATGTTCATGACGAAATTGAGGGAGAAGAAGATGAGGAGCATGCTAGAGAGGAGCATGAACATCCTGATTTGGTTGATGTGGACGAAGAGGAGCATCGTGAAGTTGTAAAGGAGAGGAAAAAGAGGAAAGAATTTGAAGTATTTGTTGGGGGCCTTGACAAGGATGCTACTGAAGATGATCTGAGGAAGGTTTTCAGTGAAGTTGGGGTGGTCACTGAAGTCAGGCTGATGATGAATCCTCAGACTAAAAAGAATAAGGGATTTGCATTCCTGCGCTTTGAAACTGTGGAACAAGCTAAGCGAGCTGTATCAGAGCTTAAAAATCCAGTGATTAATGGAAAACAATGTGGTGTAACACCAAGTCAGGATAGTGATACCCTCTATTTGGGAAACATATGCAAGACATGGACAAAGGAAGCTTTAAAGGAGAAGTTAAAGCATTATGGAGTTACAAATGTTGAGGATATAACTTTAGTAGAAGATAGTAATGATGAAGGAAAGAACCGAGGATTTGCATTTTTGGAATTTTCCTCTCGGTCAGATGCTATGGATGCATTTAAACGGCTTCAAAAGAGAGATGTTGTATTTGGGGTCGATAAGCCTGCAAAGGTTTCCTTTGCAGATTCCTTTATTGACCCGGGTGATGAAATTATGGCACAGGTCAAGACTGTGTTTATTGATGCACTCTCTCCTTCATGGGATGAAGATTATGTCCGGGATCTTCTTAAGAAATTTGGAGACATTGAAAAGATTGAACTTGCCAGGAACATGCCTGCTGCACGTAGGAAAGACTATGGATTTGTTACATTTGCCACACATGAGGCTGCAGTAAGATGTTCTGAAAGTATCAGCGGTACAGAGTTGGGTGAAGGTGACAAGAAGGCCAAAGTTAGGGCTAGGCTGTCAAGACCGCTTCAGAGAGGCCGTGGAAAACATATCAGTCGTGGGGACTACCGTCCTGGTCGTGGACCTGCAACAATGGCCAGACCTTCATGGAGCCGACCTGCACCACGTAGTTTTCCTCCGCCTCGCGGGGTTAGGGGAATTGGAAGTCGTCTTCCACCAGTCAGGCCAGTTAGTGTGAGAGATAGACGTCCTATCATGTCGGTGCCTGTAAGAAGTAGGCCTATGCCTCCTCCAGCCAGATCCTATGAGAGGAGACCTGCTCCTCCTACATATCCTAAAGTTAGCACAAAGAGAGATTATGTTCGACGTGAGGACATACCACCTCCTAGAAGTAGAGTTGCTACAGATTATGGTTCAAGGATGGCCTCTGAAAGACGCCCATCTTACAGGGATTATCCAGCCCGTGGTCCTGCATATGCTGATATTCCAAGAAGTACGTCTCGTGCTGCACCAAGGAGAGGTTACATGGATGATGGCTATGGCCAAAGATTTGAGAGGCCTCCCCCTCCGCCACCCGCCGCACACATAAGTTACCGCGAAGGAAGACCCCGCGACTATGATGCTCTCTCTGGCTCAAAACGTTCTTATGCTTCCATGGATGATGTTCCTCCACGATATGCGGATGCTGGTGCTCGCCAATCAAGAGCTCGTTTGGACTATGAGTACGGTGGTAGTGGTTCACAATATGGAGATGCTTATGGTGACAGGCTTGGAAGATCTAGTCTGGGGTATGGTGGAAGTAGCAGAAGTTCAATGTCTAGTCAGGATTCCCATGGGATGTATAGCAGTAGACAAGGCATGGGTTATGGTGGAGGTTCCTTTGGTGGTAGTGATGTTGGTGGGATGTACTCTTCAAGTTATGGTGGTGATTACATTTCACGAGGAAGCGATGTTGGAGGCAGTTCATACTCAACTATGTATTCTGGCAGGGGTGTGGGTGGTGGTAGCAGTTACATGGGTGGTGGTGGTGGTGGCTCCGGCTCTTATTATTAG | 2133 | 0.459 | MADEEEEVKESIDEYEKDERLDLEDNDPEYEPEEYIGVDYDEKEIEQDDVHELVDEVEEEAEDNAGEEEGDTGEEEVEDVHDEIEGEEDEEHAREEHEHPDLVDVDEEEHREVVKERKKRKEFEVFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFETVEQAKRAVSELKNPVINGKQCGVTPSQDSDTLYLGNICKTWTKEALKEKLKHYGVTNVEDITLVEDSNDEGKNRGFAFLEFSSRSDAMDAFKRLQKRDVVFGVDKPAKVSFADSFIDPGDEIMAQVKTVFIDALSPSWDEDYVRDLLKKFGDIEKIELARNMPAARRKDYGFVTFATHEAAVRCSESISGTELGEGDKKAKVRARLSRPLQRGRGKHISRGDYRPGRGPATMARPSWSRPAPRSFPPPRGVRGIGSRLPPVRPVSVRDRRPIMSVPVRSRPMPPPARSYERRPAPPTYPKVSTKRDYVRREDIPPPRSRVATDYGSRMASERRPSYRDYPARGPAYADIPRSTSRAAPRRGYMDDGYGQRFERPPPPPPAAHISYREGRPRDYDALSGSKRSYASMDDVPPRYADAGARQSRARLDYEYGGSGSQYGDAYGDRLGRSSLGYGGSSRSSMSSQDSHGMYSSRQGMGYGGGSFGGSDVGGMYSSSYGGDYISRGSDVGGSSYSTMYSGRGVGGGSSYMGGGGGGSGSYY | 710 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Stsc90642g00018 | 710 | MobiDBLite | consensus disorder prediction | 92 | 110 | - | - | |
Stsc90642g00018 | 710 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 203 | 287 | IPR000504 | GO:0003723 | |
Stsc90642g00018 | 710 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 302 | 367 | IPR000504 | GO:0003723 | |
Stsc90642g00018 | 710 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 125 | 193 | IPR000504 | GO:0003723 | |
Stsc90642g00018 | 710 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 205 | 271 | IPR000504 | GO:0003723 | |
Stsc90642g00018 | 710 | SMART | rrm1_1 | 204 | 283 | IPR000504 | GO:0003723 | |
Stsc90642g00018 | 710 | SMART | rrm1_1 | 124 | 197 | IPR000504 | GO:0003723 | |
Stsc90642g00018 | 710 | SMART | rrm1_1 | 301 | 376 | IPR000504 | GO:0003723 | |
Stsc90642g00018 | 710 | MobiDBLite | consensus disorder prediction | 450 | 465 | - | - | |
Stsc90642g00018 | 710 | Gene3D | - | 292 | 406 | IPR012677 | - | |
Stsc90642g00018 | 710 | Gene3D | - | 48 | 203 | IPR012677 | - | |
Stsc90642g00018 | 710 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 123 | 201 | IPR000504 | GO:0003723 | |
Stsc90642g00018 | 710 | MobiDBLite | consensus disorder prediction | 382 | 436 | - | - | |
Stsc90642g00018 | 710 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 300 | 382 | IPR000504 | GO:0003723 | |
Stsc90642g00018 | 710 | MobiDBLite | consensus disorder prediction | 624 | 644 | - | - | |
Stsc90642g00018 | 710 | Coils | Coil | 40 | 63 | - | - | |
Stsc90642g00018 | 710 | SUPERFAMILY | RNA-binding domain, RBD | 119 | 201 | IPR035979 | GO:0003676 | |
Stsc90642g00018 | 710 | SUPERFAMILY | RNA-binding domain, RBD | 202 | 367 | IPR035979 | GO:0003676 | |
Stsc90642g00018 | 710 | Coils | Coil | 1 | 21 | - | - | |
Stsc90642g00018 | 710 | MobiDBLite | consensus disorder prediction | 1 | 91 | - | - | |
Stsc90642g00018 | 710 | MobiDBLite | consensus disorder prediction | 448 | 592 | - | - | |
Stsc90642g00018 | 710 | MobiDBLite | consensus disorder prediction | 1 | 110 | - | - | |
Stsc90642g00018 | 710 | PANTHER | HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN | 9 | 679 | - | - | |
Stsc90642g00018 | 710 | MobiDBLite | consensus disorder prediction | 476 | 490 | - | - | |
Stsc90642g00018 | 710 | FunFam | RNA recognition water-stress protein1 | 290 | 411 | - | - | |
Stsc90642g00018 | 710 | CDD | RRM_SF | 205 | 272 | - | - | |
Stsc90642g00018 | 710 | Gene3D | - | 204 | 286 | IPR012677 | - | |
Stsc90642g00018 | 710 | CDD | RRM_SF | 302 | 376 | - | - | |
Stsc90642g00018 | 710 | FunFam | Heterogeneous nuclear ribonucleoprotein Q isoform A | 57 | 203 | - | - | |
Stsc90642g00018 | 710 | MobiDBLite | consensus disorder prediction | 624 | 642 | - | - | |
Stsc90642g00018 | 710 | CDD | RRM_SF | 125 | 196 | - | - | |
Stsc90642g00018 | 710 | FunFam | Heterogeneous nuclear ribonucleoprotein Q | 204 | 286 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Stsc90642g00018 | Stsc-Chr90642 | 103975 | 108843 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Stsc90642g00018 | 124 | 381 | Eukaryotic Initiation Factors Gene Family | AT1G49760 | 24.915 | 7.49e-18 | 85.9 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Stsc90642g00018 | - | - | gmx:100779340 | 973.77 |