Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90642g00018 ATGGCAGACGAGGAAGAGGAGGTTAAGGAGTCTATAGATGAATATGAAAAAGATGAACGGTTAGATTTGGAGGATAATGATCCTGAATATGAACCGGAGGAGTATATTGGAGTTGATTATGATGAGAAGGAAATTGAACAAGATGATGTTCATGAGCTGGTTGATGAAGTAGAGGAAGAAGCTGAAGACAATGCTGGTGAAGAAGAGGGTGACACTGGTGAGGAAGAAGTTGAAGATGTTCATGACGAAATTGAGGGAGAAGAAGATGAGGAGCATGCTAGAGAGGAGCATGAACATCCTGATTTGGTTGATGTGGACGAAGAGGAGCATCGTGAAGTTGTAAAGGAGAGGAAAAAGAGGAAAGAATTTGAAGTATTTGTTGGGGGCCTTGACAAGGATGCTACTGAAGATGATCTGAGGAAGGTTTTCAGTGAAGTTGGGGTGGTCACTGAAGTCAGGCTGATGATGAATCCTCAGACTAAAAAGAATAAGGGATTTGCATTCCTGCGCTTTGAAACTGTGGAACAAGCTAAGCGAGCTGTATCAGAGCTTAAAAATCCAGTGATTAATGGAAAACAATGTGGTGTAACACCAAGTCAGGATAGTGATACCCTCTATTTGGGAAACATATGCAAGACATGGACAAAGGAAGCTTTAAAGGAGAAGTTAAAGCATTATGGAGTTACAAATGTTGAGGATATAACTTTAGTAGAAGATAGTAATGATGAAGGAAAGAACCGAGGATTTGCATTTTTGGAATTTTCCTCTCGGTCAGATGCTATGGATGCATTTAAACGGCTTCAAAAGAGAGATGTTGTATTTGGGGTCGATAAGCCTGCAAAGGTTTCCTTTGCAGATTCCTTTATTGACCCGGGTGATGAAATTATGGCACAGGTCAAGACTGTGTTTATTGATGCACTCTCTCCTTCATGGGATGAAGATTATGTCCGGGATCTTCTTAAGAAATTTGGAGACATTGAAAAGATTGAACTTGCCAGGAACATGCCTGCTGCACGTAGGAAAGACTATGGATTTGTTACATTTGCCACACATGAGGCTGCAGTAAGATGTTCTGAAAGTATCAGCGGTACAGAGTTGGGTGAAGGTGACAAGAAGGCCAAAGTTAGGGCTAGGCTGTCAAGACCGCTTCAGAGAGGCCGTGGAAAACATATCAGTCGTGGGGACTACCGTCCTGGTCGTGGACCTGCAACAATGGCCAGACCTTCATGGAGCCGACCTGCACCACGTAGTTTTCCTCCGCCTCGCGGGGTTAGGGGAATTGGAAGTCGTCTTCCACCAGTCAGGCCAGTTAGTGTGAGAGATAGACGTCCTATCATGTCGGTGCCTGTAAGAAGTAGGCCTATGCCTCCTCCAGCCAGATCCTATGAGAGGAGACCTGCTCCTCCTACATATCCTAAAGTTAGCACAAAGAGAGATTATGTTCGACGTGAGGACATACCACCTCCTAGAAGTAGAGTTGCTACAGATTATGGTTCAAGGATGGCCTCTGAAAGACGCCCATCTTACAGGGATTATCCAGCCCGTGGTCCTGCATATGCTGATATTCCAAGAAGTACGTCTCGTGCTGCACCAAGGAGAGGTTACATGGATGATGGCTATGGCCAAAGATTTGAGAGGCCTCCCCCTCCGCCACCCGCCGCACACATAAGTTACCGCGAAGGAAGACCCCGCGACTATGATGCTCTCTCTGGCTCAAAACGTTCTTATGCTTCCATGGATGATGTTCCTCCACGATATGCGGATGCTGGTGCTCGCCAATCAAGAGCTCGTTTGGACTATGAGTACGGTGGTAGTGGTTCACAATATGGAGATGCTTATGGTGACAGGCTTGGAAGATCTAGTCTGGGGTATGGTGGAAGTAGCAGAAGTTCAATGTCTAGTCAGGATTCCCATGGGATGTATAGCAGTAGACAAGGCATGGGTTATGGTGGAGGTTCCTTTGGTGGTAGTGATGTTGGTGGGATGTACTCTTCAAGTTATGGTGGTGATTACATTTCACGAGGAAGCGATGTTGGAGGCAGTTCATACTCAACTATGTATTCTGGCAGGGGTGTGGGTGGTGGTAGCAGTTACATGGGTGGTGGTGGTGGTGGCTCCGGCTCTTATTATTAG 2133 0.459 MADEEEEVKESIDEYEKDERLDLEDNDPEYEPEEYIGVDYDEKEIEQDDVHELVDEVEEEAEDNAGEEEGDTGEEEVEDVHDEIEGEEDEEHAREEHEHPDLVDVDEEEHREVVKERKKRKEFEVFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFETVEQAKRAVSELKNPVINGKQCGVTPSQDSDTLYLGNICKTWTKEALKEKLKHYGVTNVEDITLVEDSNDEGKNRGFAFLEFSSRSDAMDAFKRLQKRDVVFGVDKPAKVSFADSFIDPGDEIMAQVKTVFIDALSPSWDEDYVRDLLKKFGDIEKIELARNMPAARRKDYGFVTFATHEAAVRCSESISGTELGEGDKKAKVRARLSRPLQRGRGKHISRGDYRPGRGPATMARPSWSRPAPRSFPPPRGVRGIGSRLPPVRPVSVRDRRPIMSVPVRSRPMPPPARSYERRPAPPTYPKVSTKRDYVRREDIPPPRSRVATDYGSRMASERRPSYRDYPARGPAYADIPRSTSRAAPRRGYMDDGYGQRFERPPPPPPAAHISYREGRPRDYDALSGSKRSYASMDDVPPRYADAGARQSRARLDYEYGGSGSQYGDAYGDRLGRSSLGYGGSSRSSMSSQDSHGMYSSRQGMGYGGGSFGGSDVGGMYSSSYGGDYISRGSDVGGSSYSTMYSGRGVGGGSSYMGGGGGGSGSYY 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90642g00018 710 MobiDBLite consensus disorder prediction 92 110 - -
Stsc90642g00018 710 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 203 287 IPR000504 GO:0003723
Stsc90642g00018 710 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 302 367 IPR000504 GO:0003723
Stsc90642g00018 710 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 125 193 IPR000504 GO:0003723
Stsc90642g00018 710 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 205 271 IPR000504 GO:0003723
Stsc90642g00018 710 SMART rrm1_1 204 283 IPR000504 GO:0003723
Stsc90642g00018 710 SMART rrm1_1 124 197 IPR000504 GO:0003723
Stsc90642g00018 710 SMART rrm1_1 301 376 IPR000504 GO:0003723
Stsc90642g00018 710 MobiDBLite consensus disorder prediction 450 465 - -
Stsc90642g00018 710 Gene3D - 292 406 IPR012677 -
Stsc90642g00018 710 Gene3D - 48 203 IPR012677 -
Stsc90642g00018 710 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 123 201 IPR000504 GO:0003723
Stsc90642g00018 710 MobiDBLite consensus disorder prediction 382 436 - -
Stsc90642g00018 710 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 300 382 IPR000504 GO:0003723
Stsc90642g00018 710 MobiDBLite consensus disorder prediction 624 644 - -
Stsc90642g00018 710 Coils Coil 40 63 - -
Stsc90642g00018 710 SUPERFAMILY RNA-binding domain, RBD 119 201 IPR035979 GO:0003676
Stsc90642g00018 710 SUPERFAMILY RNA-binding domain, RBD 202 367 IPR035979 GO:0003676
Stsc90642g00018 710 Coils Coil 1 21 - -
Stsc90642g00018 710 MobiDBLite consensus disorder prediction 1 91 - -
Stsc90642g00018 710 MobiDBLite consensus disorder prediction 448 592 - -
Stsc90642g00018 710 MobiDBLite consensus disorder prediction 1 110 - -
Stsc90642g00018 710 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 9 679 - -
Stsc90642g00018 710 MobiDBLite consensus disorder prediction 476 490 - -
Stsc90642g00018 710 FunFam RNA recognition water-stress protein1 290 411 - -
Stsc90642g00018 710 CDD RRM_SF 205 272 - -
Stsc90642g00018 710 Gene3D - 204 286 IPR012677 -
Stsc90642g00018 710 CDD RRM_SF 302 376 - -
Stsc90642g00018 710 FunFam Heterogeneous nuclear ribonucleoprotein Q isoform A 57 203 - -
Stsc90642g00018 710 MobiDBLite consensus disorder prediction 624 642 - -
Stsc90642g00018 710 CDD RRM_SF 125 196 - -
Stsc90642g00018 710 FunFam Heterogeneous nuclear ribonucleoprotein Q 204 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90642g00018 Stsc-Chr90642 103975 108843 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90642g00018 124 381 Eukaryotic Initiation Factors Gene Family AT1G49760 24.915 7.49e-18 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90642g00018 - - gmx:100779340 973.77