Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90642g00016 ATGCCTCCAAGAACGGTGAAGCGTGGCGGCACCCCTGGAAGAAGGGGCGGAAGAGGAGGCAGGGGGGCCTCGAAGGCTGCGCAGAATCAGCAGCAGCAGCAGCAGCCTAACCCTGAAGCTGTGGAAGAACCGGCGAAGCTCGAGGAGAAGCCGGTTCCCGAGGAGGAGCCAAAAGCCGAAGTGAACCCTAATCTTGAAGAGAAACCTGTCGTTGTTGAAGAGGAGAAGCCCTTTGTTGAGGAAAAAGCGATTGATATGAATCAAATGGCTCCTGAAGCTGTAGAAGAAGCAGCAGCAACCCACGTTCATAATGGATCAGCTGTGGCGAGAAACGAGGAAGAGGAGGTTAAGGAGTCTATAGATGAATATGAAAAAGATGAACGGTTAGATTTGGAGGATAATGATCCTGAATATGAACCGGAGGAGTATATTGGAGTTGATTATGATGAGAAGGAAATTGAACAAGATGATGTTCATGAGCTGGTTGATGAAGTAGAGGAAGAAGCTGAAGACAATGCTGGTGAAGAAGAGGGTGACACTGGTGAGGAAGAAGTTGAAGATGTTCATGACGAAATTGAGGGAGAAGAAGATGAGGAGCATGCTAGAGAGGAGCATGAACATCCTGATTTGGTTGATGTGGACGAAGAGGAGCATCGTGAAGTTGTAAAGGAGAGGAAAAAGAGGAAAGAATTTGAAGTATTTGTTGGGGGCCTTGACAAGGATGCTACTGAAGATGATCTGAGGAAGGTTTTCAGTGAAGTTGGGGTGGTCACTGAAGTCAGGCTGATGATGAATCCTCAGACTAAAAAGAATAAGGGATTTGCATTCCTGCGCTTTGAAACTGTGGAACAAGCTAAGCGAGCTGTATCAGAGCTTAAAAATCCAGTGATTAATGGAAAACAATGTGGTGTAACACCAAGTCAGGATAGTGATACCCTCTATTTGGGAAACATATGCAAGACATGGACAAAGGAAGCTTTAAAGGAGAAGTTAAAGCATTATGGAGTTACAAATGTTGAGGATATAACTTTAGTAGAAGATAGTAATGATGAAGGAAAGAACCGAGGATTTGCATTTTTGGAATTTTCCTCTCGGTCAGATGCTATGGATGCATTTAAACGGCTTCAAAAGAGAGATGTTGTATTTGGGGTCGATAAGCCTGCAAAGGTTTCCTTTGCAGATTCCTTTATTGACCCGGGTGATGAAATTATGGCACAGGTCAAGACTGTGTTTATTGATGCACTCTCTCCTTCATGGGATGAAGATTATGTCCGGGATCTTCTTAAGAAATTTGGAGACATTGAAAAGATTGAACTTGCCAGGAACATGCCTGCTGCACGTAGGAAAGACTATGGATTTGTTACATTTGCCACACATGAGGCTGCAGTAAGATGTTCTGAAAGTATCAGCGGTACAGAGTTGGGTGAAGGTGACAAGAAGGCCAAAGTTAGGGCTAGGCTGTCAAGACCGCTTCAGAGAGGCCGTGGAAAACATATCAGTCGTGGGGACTACCGTCCTGGTCGTGGACCTGCAACAATGGCCAGACCTTCATGGAGCCGACCTGCACCACGTAGTTTTCCTCCGCCTCGCGGGGTTAGGGGAATTGGAAGTCGTCTTCCACCAGTCAGGCCAGTTAGTGTGAGAGATAGACGTCCTATCATGTCGGTGCCTGTAAGAAGTAGGCCTATGCCTCCTCCAGCCAGATCCTATGAGAGGAGACCTGCTCCTCCTACATATCCTAAAGTTAGCACAAAGAGAGATTATGTTCGACGTGAGGACATACCACCTCCTAGAAGTAGAGTTGCTACAGATTATGGTTCAAGGATGGCCTCTGAAAGACGCCCATCTTACAGGGATTATCCAGCCCGTGGTCCTGCATATGCTGATATTCCAAGAAGTACGTCTCGTGCTGCACCAAGGAGAGGTTACATGGATGATGGCTATGGCCAAAGATTTGAGAGGCCTCCCCCTCCGCCACCCGCCGCACACATAAGTTACCGCGAAGGAAGACCCCGCGACTATGATGCTCTCTCTGGCTCAAAACGTTCTTATGCTTCCATGGATGATGTTCCTCCACGATATGCGGATGCTGGTGCTCGCCAATCAAGAGCTCGTTTGGACTATGAGTACGGTGGTAGTGGTTCACAATATGGAGATGCTTATGGTGACAGGCTTGGAAGATCTAGTCTGGGGTATGGTGGAAGTAGCAGAAGTTCAATGTCTAGTCAGGATTCCCATGGGATGTATAGCAGTAGACAAGGCATGGGTTATGGTGGAGGTTCCTTTGGTGGTAGTGATGTTGGTGGGATGTACTCTTCAAGTTATGGTGGTGATTACATTTCACGAGGAAGCGATGTTGGAGGCAGTTCATACTCAACTATGTATTCTGGCAGGGGTGTGGGTGGTGGTAGCAGTTACATGGGTGGTGGTGGTGGTGGCTCCGGCTCTTATTATTAG 2457 0.4709 MPPRTVKRGGTPGRRGGRGGRGASKAAQNQQQQQQPNPEAVEEPAKLEEKPVPEEEPKAEVNPNLEEKPVVVEEEKPFVEEKAIDMNQMAPEAVEEAAATHVHNGSAVARNEEEEVKESIDEYEKDERLDLEDNDPEYEPEEYIGVDYDEKEIEQDDVHELVDEVEEEAEDNAGEEEGDTGEEEVEDVHDEIEGEEDEEHAREEHEHPDLVDVDEEEHREVVKERKKRKEFEVFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFETVEQAKRAVSELKNPVINGKQCGVTPSQDSDTLYLGNICKTWTKEALKEKLKHYGVTNVEDITLVEDSNDEGKNRGFAFLEFSSRSDAMDAFKRLQKRDVVFGVDKPAKVSFADSFIDPGDEIMAQVKTVFIDALSPSWDEDYVRDLLKKFGDIEKIELARNMPAARRKDYGFVTFATHEAAVRCSESISGTELGEGDKKAKVRARLSRPLQRGRGKHISRGDYRPGRGPATMARPSWSRPAPRSFPPPRGVRGIGSRLPPVRPVSVRDRRPIMSVPVRSRPMPPPARSYERRPAPPTYPKVSTKRDYVRREDIPPPRSRVATDYGSRMASERRPSYRDYPARGPAYADIPRSTSRAAPRRGYMDDGYGQRFERPPPPPPAAHISYREGRPRDYDALSGSKRSYASMDDVPPRYADAGARQSRARLDYEYGGSGSQYGDAYGDRLGRSSLGYGGSSRSSMSSQDSHGMYSSRQGMGYGGGSFGGSDVGGMYSSSYGGDYISRGSDVGGSSYSTMYSGRGVGGGSSYMGGGGGGSGSYY 818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90642g00016 818 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 311 395 IPR000504 GO:0003723
Stsc90642g00016 818 MobiDBLite consensus disorder prediction 556 700 - -
Stsc90642g00016 818 MobiDBLite consensus disorder prediction 584 598 - -
Stsc90642g00016 818 MobiDBLite consensus disorder prediction 24 39 - -
Stsc90642g00016 818 Gene3D - 312 394 IPR012677 -
Stsc90642g00016 818 MobiDBLite consensus disorder prediction 732 752 - -
Stsc90642g00016 818 SUPERFAMILY RNA-binding domain, RBD 309 475 IPR035979 GO:0003676
Stsc90642g00016 818 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 58 787 - -
Stsc90642g00016 818 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 231 309 IPR000504 GO:0003723
Stsc90642g00016 818 Gene3D - 149 311 IPR012677 -
Stsc90642g00016 818 CDD RRM_SF 410 484 - -
Stsc90642g00016 818 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 408 490 IPR000504 GO:0003723
Stsc90642g00016 818 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 313 379 IPR000504 GO:0003723
Stsc90642g00016 818 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 233 301 IPR000504 GO:0003723
Stsc90642g00016 818 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 410 475 IPR000504 GO:0003723
Stsc90642g00016 818 CDD RRM_SF 233 304 - -
Stsc90642g00016 818 CDD RRM_SF 313 380 - -
Stsc90642g00016 818 Gene3D - 400 514 IPR012677 -
Stsc90642g00016 818 MobiDBLite consensus disorder prediction 125 199 - -
Stsc90642g00016 818 MobiDBLite consensus disorder prediction 42 72 - -
Stsc90642g00016 818 FunFam RNA recognition water-stress protein1 398 519 - -
Stsc90642g00016 818 MobiDBLite consensus disorder prediction 1 72 - -
Stsc90642g00016 818 Coils Coil 106 129 - -
Stsc90642g00016 818 MobiDBLite consensus disorder prediction 558 573 - -
Stsc90642g00016 818 MobiDBLite consensus disorder prediction 732 750 - -
Stsc90642g00016 818 MobiDBLite consensus disorder prediction 107 124 - -
Stsc90642g00016 818 MobiDBLite consensus disorder prediction 200 218 - -
Stsc90642g00016 818 MobiDBLite consensus disorder prediction 95 218 - -
Stsc90642g00016 818 Coils Coil 148 171 - -
Stsc90642g00016 818 MobiDBLite consensus disorder prediction 490 544 - -
Stsc90642g00016 818 FunFam Heterogeneous nuclear ribonucleoprotein Q 312 394 - -
Stsc90642g00016 818 SMART rrm1_1 409 484 IPR000504 GO:0003723
Stsc90642g00016 818 SMART rrm1_1 312 391 IPR000504 GO:0003723
Stsc90642g00016 818 SMART rrm1_1 232 305 IPR000504 GO:0003723
Stsc90642g00016 818 SUPERFAMILY RNA-binding domain, RBD 227 309 IPR035979 GO:0003676
Stsc90642g00016 818 FunFam Heterogeneous nuclear ribonucleoprotein Q isoform A 164 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90642g00016 Stsc-Chr90642 102904 108901 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90642g00016 233 489 Eukaryotic Initiation Factors Gene Family AT1G49760 25.000 5.40e-18 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90642g00016 - - gmx:100779340 1009.59