Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90642g00011 ATGGCAAATCAAGTTAAAACTATTACCACCACCACTAATAATGAACCCAATAATAATAATAATAATTTTGCGTATGATGTTTTTCTTAGCTTTAGGGGTGAAGACACCCGCTACTCTTTCACAGGTTTTCTCTATGATGCTCTGTTCCGGAAGGGACTCAGAGTGTTCATGGATGAGGAAGATTTGAAGGGTGGGGACCGAATCGCGCAGTCTCTGCTAAATGCAATTCAACAATCAAGAATTTCACTTGTTGTTTTCTCTGAGAATTATGCAACTTCAACGTGGTGTCTCGATGAGCTTGTCAAGATCCTTGAGTGTATGGAGTTGAAGGGCCAAATAGTTTTGCCAATCTTTTACAAAGTGGCACCTTCTGATGTAAGACATCAGAGAAAGAGTTATGCTGAAGCCATGGCTGCACATGAAGAAAGGTTCGGAAATGGATCTATTCAGCTCCACAAATGGAGATCAGCTTTGTTTCAAGCTGCTAACTTGAAAGGATGGTCTTACCAAACTGGGTATGAATTCGAATTTATACATGAGATTGTGAGAAGGGTCACTATTAAATTACAGCATGAACTACTAAATGTTGGAGAGCATCTAATTGGACTCCAGTCTCGCGTAGAAGAAGTGAAGTCACTTTTAGACATGGAATCTCAAAGCACAGTTTGCATGCTAGGAATTTATGGAACAGGCGGAATTGGCAAAACAACACTCGCCAAAGTTCTTTACAACTCAATCATGGATAAATTTGAATGTTCAATTTTCCTTGAAGGAGTTAGAGAAAGATCAAACAGTACTTATATGGGCCTAGTACATCTCCAAGAGGCTATTTTGTCTAAGCTATATGAAGGGGAAAATATAAAGCTGGAGAATGCTGAAGATGGCATCACTAAGTTAAAATACACATTGAAGCATAGGAGAGTTCTTTTGGTACTCGACGATGTTGATAGCGAGGATCAAATAAGAAAATTAGGAGGCGACGGCGATTGCGACTGGTTTGGTTTAGGAAGTAGAATAGTCATAACAACAAGAGATAAACATTTGCTAAACATTGGTGGGGTTGAAAAGAAATATGAGATGAAGAGGTTACATGATGATGAAGGTCTTCAACTCTTTTGCTTGAAAGCTTTCAAAATGAATCATCCTTCACCTGAATACAAAGATGTGTCTAATCATGTGGTTCATTATGCAAAGGGCCTTCCATTAGCTCTAAAAGTGTTAGGGTCTCATTTCGCTGATAAATCCATAAAGGATTGTGAATGTGCATTGAAACAATTCAAGAGGATTCAAGAGAGAACATACATGACATACTAA 1314 0.3851 MANQVKTITTTTNNEPNNNNNNFAYDVFLSFRGEDTRYSFTGFLYDALFRKGLRVFMDEEDLKGGDRIAQSLLNAIQQSRISLVVFSENYATSTWCLDELVKILECMELKGQIVLPIFYKVAPSDVRHQRKSYAEAMAAHEERFGNGSIQLHKWRSALFQAANLKGWSYQTGYEFEFIHEIVRRVTIKLQHELLNVGEHLIGLQSRVEEVKSLLDMESQSTVCMLGIYGTGGIGKTTLAKVLYNSIMDKFECSIFLEGVRERSNSTYMGLVHLQEAILSKLYEGENIKLENAEDGITKLKYTLKHRRVLLVLDDVDSEDQIRKLGGDGDCDWFGLGSRIVITTRDKHLLNIGGVEKKYEMKRLHDDEGLQLFCLKAFKMNHPSPEYKDVSNHVVHYAKGLPLALKVLGSHFADKSIKDCECALKQFKRIQERTYMTY 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90642g00011 437 Gene3D - 362 437 IPR042197 -
Stsc90642g00011 437 SMART till_3 24 164 IPR000157 GO:0007165
Stsc90642g00011 437 Pfam NB-ARC domain 205 416 IPR002182 GO:0043531
Stsc90642g00011 437 SUPERFAMILY Toll/Interleukin receptor TIR domain 19 167 IPR035897 -
Stsc90642g00011 437 Gene3D - 24 188 IPR035897 -
Stsc90642g00011 437 ProSiteProfiles TIR domain profile. 23 189 IPR000157 GO:0007165
Stsc90642g00011 437 Gene3D - 189 354 IPR027417 -
Stsc90642g00011 437 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 186 432 IPR027417 -
Stsc90642g00011 437 Pfam TIR domain 24 191 IPR000157 GO:0007165
Stsc90642g00011 437 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 25 431 IPR044974 GO:0006952
Stsc90642g00011 437 FunFam Disease resistance protein (TIR-NBS-LRR class) 21 191 - -
Stsc90642g00011 437 PRINTS Disease resistance protein signature 224 239 - -
Stsc90642g00011 437 PRINTS Disease resistance protein signature 397 411 - -
Stsc90642g00011 437 PRINTS Disease resistance protein signature 302 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90642g00011 Stsc-Chr90642 59754 61877 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90642g00011 25 409 WRKY Transcription Factor Family AT4G12020 27.720 3.47e-33 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90642g00011 - - ahf:112712880 677.552