Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90642g00007 ATGACAATGATGATGAAGATAACGGGTGTTGTCTTAGCAGGGTTCTCCGTGGTTTTGCTGCATATTGTGAATGAGCTCTTCTTGAAGCCAAGATCATTGAGATCAAAGCTTCAGAAGCAGGGTATTCATGGACCTTCTCCTCACTTCTACTTTGGTAACATCCCAGAAAAGAACAACATTCTAGAACAACATCTTCAAGCTCATAATAATAATGTTGCATCTTCACAACAACACAAAGACAAAGCTGTTTCTGCTTCTATTATATCTCACAGGTGGTATCCCAATTTGTTTCCTCATGTTGAAAAGTGGAGAAATCAATATGGTCCCATATACTTGTTTTCTTCTGGGAATGTAGAGTGGTTGGTGGTGTCTGATATAGAAATGGTGAAAGAAATCACCCTTTACACATCTGTGAATCTAGGGAAGCCTTCTCTTAAATCCAGAGAATTAGGGCCTCTCTTAGGGCAAGGTATACTGTCATCAAGTGGACCAACTTGGGTTCATCAGAGGAAGATCATTGCTCCTTCATTATACCTTGATAAGGTCAAGGAAATGATTAGCTTGATTGTTCAATCCACAAATATAACACTCAAGTCTTGGGAGAGTAGACTCAAGGATGAGGGAGAAGCTCTGGAGCTTAGAATTGACGACGATTTGCGAAGCTTGTCAGCAGACATAATTGCAAGAGCTTGTTTCGGGATCAATTATGTCGAAGGAAGTGAAATATTTGCAAAGCTTAAGGATATTCAAATCCTCTTGTCTGCAAAAGATGCTGGAATTCCAGGCTTTCAATACTTGCCAACTAAAAGAAATAGAGAGATATGGAGATTGGAGAAAGAGGTAGACTCCATGATATCGAAGATCATAAACGAACGCTTACAGCAGGATGCAGAAGAGCAAGATCTTTTACAAATGATACTTGAAGGTGCAAAGAGTTGTGAGGGAAGTGATAGCATCTTTTCAGATTCTGTATCTCGCGACCGGTTCATAATAGATAATTGCAAGAACATATTCTTTGCTGGACATGAGAGTACTGCAATTACAGCATCATGGTGCCTGTTGTTGTTAGCCATACACCAAGATTGGCAAGATCGCGTCAGGGCCGAGGTTCTTGAACTTTGTGGCAACCATGCCCCGGATGCAAGCATGCTTAGAAAAATGAAGATGCTGAACATGGTGATTCAAGAGACAATGCGGCTTTACCCGGCGGCGGCGTTTGTTTCGAGATCAGCATTGCAAGACATTGAGTTGAAAGGTATCCTAATTCCAAAAGGAATGAACATTGAGATTTCAGTACCAATACTAATGCAAGACCCTGAGATTTGGGGTCATGATTCACACAAGTTCAATCCAGAAAGATTCTCAAATGGAATCCTTGGAGCTTGTAGATTCCCACAAGCATATTTGCCATTTGGATTAGGGGCTAGGGTTTGTGCTGGACAACACTTAGCCATGACTGAATTGAAGTTTCTCCAACTCTTCTCTCAACCCTTCTCCACGCTGCAGAACTTAAGAGGGCCGCCGCGGCTCAGCCCTTAA 1539 0.4178 MTMMMKITGVVLAGFSVVLLHIVNELFLKPRSLRSKLQKQGIHGPSPHFYFGNIPEKNNILEQHLQAHNNNVASSQQHKDKAVSASIISHRWYPNLFPHVEKWRNQYGPIYLFSSGNVEWLVVSDIEMVKEITLYTSVNLGKPSLKSRELGPLLGQGILSSSGPTWVHQRKIIAPSLYLDKVKEMISLIVQSTNITLKSWESRLKDEGEALELRIDDDLRSLSADIIARACFGINYVEGSEIFAKLKDIQILLSAKDAGIPGFQYLPTKRNREIWRLEKEVDSMISKIINERLQQDAEEQDLLQMILEGAKSCEGSDSIFSDSVSRDRFIIDNCKNIFFAGHESTAITASWCLLLLAIHQDWQDRVRAEVLELCGNHAPDASMLRKMKMLNMVIQETMRLYPAAAFVSRSALQDIELKGILIPKGMNIEISVPILMQDPEIWGHDSHKFNPERFSNGILGACRFPQAYLPFGLGARVCAGQHLAMTELKFLQLFSQPFSTLQNLRGPPRLSP 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90642g00007 512 PRINTS P450 superfamily signature 340 357 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc90642g00007 512 PRINTS P450 superfamily signature 392 403 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc90642g00007 512 PRINTS P450 superfamily signature 469 478 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc90642g00007 512 PRINTS P450 superfamily signature 478 489 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc90642g00007 512 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 471 480 IPR017972 GO:0005506|GO:0016705
Stsc90642g00007 512 PRINTS E-class P450 group I signature 222 240 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc90642g00007 512 PRINTS E-class P450 group I signature 468 478 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc90642g00007 512 PRINTS E-class P450 group I signature 104 123 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc90642g00007 512 PRINTS E-class P450 group I signature 391 409 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc90642g00007 512 PRINTS E-class P450 group I signature 349 375 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc90642g00007 512 PRINTS E-class P450 group I signature 329 346 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc90642g00007 512 Gene3D Cytochrome P450 27 493 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc90642g00007 512 Pfam Cytochrome P450 96 490 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc90642g00007 512 PANTHER CYTOCHROME P450 FAMILY MEMBER 24 491 - -
Stsc90642g00007 512 SUPERFAMILY Cytochrome P450 91 491 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90642g00007 Stsc-Chr90642 34039 36956 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90642g00007 128 491 Cytochrome P450 AT5G24900 43.850 2.31e-111 335
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90642g00007 K24544 - gmx:100780335 680.248